Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C17
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 168 3e-42
02_05_0416 + 28791512-28792012 167 5e-42
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 2.4
09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094 28 5.5
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 7.2
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 28 7.2
08_02_0208 - 14318485-14319283,14319704-14320170 27 9.6
07_03_0313 + 16620817-16621515 27 9.6
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 9.6
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 9.6
03_06_0499 - 34354040-34354528 27 9.6
>04_04_1026 + 30214437-30214937
Length = 166
Score = 168 bits (409), Expect = 3e-42
Identities = 93/170 (54%), Positives = 118/170 (69%), Gaps = 7/170 (4%)
Frame = +2
Query: 125 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATS-DWKGLKIT 301
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIA T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 302 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL------AGCNRNC 463
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL A RN
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRN- 119
Query: 464 EXHXKQINGPVPFWLSKRDSWAQHSQLDVLVEGRPPHDLIDDINSGALTI 613
K++ G V ++ + V+G+ P DL +I+ G + I
Sbjct: 120 RSMAKEMAGTV------KEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 441 LQDVIGIAXIMXNRSMARYLSGSVKEILG 527
L DVI IA IM NRSMA+ ++G+VKEILG
Sbjct: 107 LDDVIEIARIMRNRSMAKEMAGTVKEILG 135
>02_05_0416 + 28791512-28792012
Length = 166
Score = 167 bits (407), Expect = 5e-42
Identities = 79/107 (73%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
Frame = +2
Query: 125 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATS-DWKGLKIT 301
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIA T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 302 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISL 442
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISL 107
Score = 37.9 bits (84), Expect = 0.007
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +3
Query: 441 LQDVIGIAXIMXNRSMARYLSGSVKEILG 527
L DVI IA +M RSMA+ ++G+VKEILG
Sbjct: 107 LDDVIEIARVMRPRSMAKEMAGTVKEILG 135
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 281 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 409
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094
Length = 326
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 455 RNCEXHXKQINGPVPFWLSKRDSWAQHSQLDVLVEGRPPHDLIDD 589
++CE H I+G +P L ++ L L G P L DD
Sbjct: 220 KDCELHVSDISGSLPELLGDEEARTAQLNLQSLHTGNPTISLQDD 264
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 122 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 250
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 237 DRPRGPILGAKDDVAPTSPPTHRKFTILISFGSNL 133
D GP G DD + T P H + T I F N+
Sbjct: 646 DEDSGPRPGTSDDSSATKPAEHNESTAEILFNPNV 680
>08_02_0208 - 14318485-14319283,14319704-14320170
Length = 421
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 225 GPILGAKDDVAPTSPPTHRKFTILISFGSNLGGILL 118
G GA DD P P R + +SF +GG L+
Sbjct: 256 GDASGANDDNEPAGRPLKRSKKLRVSFRDQVGGELI 291
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 288 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 151
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 275 LWXWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 168
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 164 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 265
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>03_06_0499 - 34354040-34354528
Length = 162
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = -2
Query: 465 SQFRLHPAREMLPLCLIFFCFLRSRGGSLRALMIRAAAEGTTAIWACLF*TVSCTVILRP 286
S F L ++ L FF RGG R+L AA+G A W C CT + P
Sbjct: 57 SDFLLGSGAKLKEKYLGFFSGEGERGGEARSL----AAKGAAAAWPCCDNCGGCTKSIPP 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,578,539
Number of Sequences: 37544
Number of extensions: 396325
Number of successful extensions: 1029
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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