Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C17
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.) 204 5e-53
SB_40184| Best HMM Match : PTR2 (HMM E-Value=0) 29 2.4
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3) 29 3.2
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05) 29 3.2
SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1) 29 4.2
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2) 28 5.6
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 27 9.8
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 27 9.8
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10) 27 9.8
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36) 27 9.8
SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5) 27 9.8
SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09) 27 9.8
>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 204 bits (498), Expect = 5e-53
Identities = 105/170 (61%), Positives = 125/170 (73%), Gaps = 5/170 (2%)
Frame = +2
Query: 125 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 304
MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIA AT DWKGLKITV
Sbjct: 1 MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKITV 60
Query: 305 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLAGCNRNCE-----X 469
LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L +
Sbjct: 61 CLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVAKVMRPRS 120
Query: 470 HXKQINGPVPFWLSKRDSWAQHSQLDVLVEGRPPHDLIDDINSGALTIDE 619
+ ++G V L S + V+G PHD+ID INSG + I++
Sbjct: 121 MARHLSGTVKEILGTCQS------VGCTVDGMAPHDVIDKINSGEIEIED 164
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3
Query: 441 LQDVIGIAXIMXNRSMARYLSGSVKEILG 527
L DV +A +M RSMAR+LSG+VKEILG
Sbjct: 106 LDDVTNVAKVMRPRSMARHLSGTVKEILG 134
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +1
Query: 514 KRFLGTAQSVGCTGGGQA 567
K LGT QSVGCT G A
Sbjct: 130 KEILGTCQSVGCTVDGMA 147
>SB_40184| Best HMM Match : PTR2 (HMM E-Value=0)
Length = 421
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 48 SPCGIQTHPFGFNVIIVXS*TKXSTKCPLSLTQMKLKS*ICDVS 179
+PC ++ FGF+ + P++LT +K++S C V+
Sbjct: 290 APCPLKVSGFGFDTSLAVDKASVYAHVPITLTNLKVESQNCSVA 333
>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
Length = 1165
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 574 MWRPALHQYIQLT-VLCPRISFTEPERYRA 488
MWRP + Q L LC R+ T +RYRA
Sbjct: 1026 MWRPYIKQLSYLLGFLCQRLVVTSSQRYRA 1055
>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
Length = 302
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 293 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 424
++ ++ RQ + +PSA IR +E PR +K N+KH
Sbjct: 97 RVIIRAVGSRRQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140
>SB_22517| Best HMM Match : UPF0081 (HMM E-Value=1)
Length = 2568
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 185 EVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITVQLTVQNRQAQIAVVPS 352
E+G T + + LG PK V +D +DW + + IA+ PS
Sbjct: 1793 ELGITDAEGNYVDSLGADPKAVSNDYVGYATDWVNNNLPENAITNSTWTGIALGPS 1848
>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
Length = 671
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 197 TSSLAP-KIGPLGLSPKKVGDD--IAXATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 367
T L P ++ PLGL PKK+ D ++ S KGL + +++++ + A + A + I
Sbjct: 369 TPPLVPFRVSPLGLVPKKLPGDFRLSHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 428
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -2
Query: 348 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 175
G IW T T+ L+ F +L +A + D+ +G I + +AP S
Sbjct: 271 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 330
Query: 174 HRKFTI 157
+ FT+
Sbjct: 331 KQDFTL 336
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 197 TSSLAP-KIGPLGLSPKKVGDD--IAXATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 367
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 465 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 524
>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 288 PFQSLVALAMSS--PTFLGDRPRGPILGAKDDVAPTSP 181
PF +L+ SS F+ DRPRGP G D + P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397
>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
Length = 291
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -2
Query: 348 GTTAIWACLF*TVSCTVILRP--FQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPT 175
G IW T T+ L+ F +L +A + D+ +G I + +AP S
Sbjct: 109 GALRIWTVAKSTPVATIRLKKTGFHALAVIATQNTNSRTDQSQGAISSTSEAIAPPSMSN 168
Query: 174 HRKFTI 157
+ FT+
Sbjct: 169 KQDFTL 174
>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 221 GPLGLSPKKVGDDIAXATSDWKG 289
GPLG+ +++ D ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359
>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
Length = 646
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 143 PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 253
P+ +L+C G E TSS+ P +G LG K G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632
>SB_37369| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 197 TSSLAP-KIGPLGLSPKKVGDD--IAXATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 367
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 48 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 107
>SB_5930| Best HMM Match : Alpha_GJ (HMM E-Value=8.5)
Length = 386
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 197 TSSLAP-KIGPLGLSPKKVGDD--IAXATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 367
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 263 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 322
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 149 EIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDD--IAXATSDWKGLKITVQLTVQN 322
E V +G + + + PLGL PKK+ D + S KGL + +++++
Sbjct: 306 EHSTVRYATIGDAISKIRAAGRGVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEH 365
Query: 323 RQAQIAVVPSAAALI 367
+ A + A + I
Sbjct: 366 STVRYATIGDAISKI 380
>SB_2226| Best HMM Match : RVT_1 (HMM E-Value=4.6e-09)
Length = 944
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 197 TSSLAP-KIGPLGLSPKKVGDD--IAXATSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 367
T L P ++ PLGL PKK+ D + S KGL + +++++ + A + A + I
Sbjct: 444 TPPLVPFRVSPLGLVPKKLPGDFRLIHHLSYPKGLSVNDGISLEHSTVRYATIGDAISKI 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,383
Number of Sequences: 59808
Number of extensions: 428513
Number of successful extensions: 950
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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