Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C17
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 188 4e-48
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 29 2.1
AL032647-4|CAA21692.1| 360|Caenorhabditis elegans Hypothetical ... 28 4.9
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 6.5
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.5
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.5
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.5
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 6.5
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 6.5
AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophi... 27 8.6
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 188 bits (457), Expect = 4e-48
Identities = 94/168 (55%), Positives = 121/168 (72%), Gaps = 5/168 (2%)
Frame = +2
Query: 125 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 304
MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIA AT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 305 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLAGCNRNCEXHX--- 475
+LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG++++ +
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120
Query: 476 --KQINGPVPFWLSKRDSWAQHSQLDVLVEGRPPHDLIDDINSGALTI 613
K++ G V L S + ++G+ PHD+I+ I +G + I
Sbjct: 121 MAKKLEGTVKEILGTAQS------VGCTIDGQHPHDIIESIANGEIEI 162
Score = 35.1 bits (77), Expect = 0.043
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 408 RKISNTTATSPL--QDVIGIAXIMXNRSMARYLSGSVKEILG 527
+K+ N L +I IA IM RSMA+ L G+VKEILG
Sbjct: 93 KKVKNVKHNGDLTVDTIIKIARIMRPRSMAKKLEGTVKEILG 134
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +1
Query: 514 KRFLGTAQSVGCTGGGQ 564
K LGTAQSVGCT GQ
Sbjct: 130 KEILGTAQSVGCTIDGQ 146
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +1
Query: 514 KRFLGTAQSVGCTGGGQ 564
K LGTAQSVGCT GQ
Sbjct: 15 KEILGTAQSVGCTIDGQ 31
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3
Query: 471 MXNRSMARYLSGSVKEILG 527
M RSMA+ L G+VKEILG
Sbjct: 1 MRPRSMAKKLEGTVKEILG 19
>AL032647-4|CAA21692.1| 360|Caenorhabditis elegans Hypothetical
protein Y57A10B.5 protein.
Length = 360
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 540 SWMYWWRAGRHMILLMTSTAEL*PLMNKCF*Y 635
S+ WW +GR+ ++L+ ST ++ L C+ Y
Sbjct: 102 SYFSWWSSGRNDMVLVESTDDIRVLYIACYVY 133
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 406 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 281
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 406 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 281
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 406 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 281
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 406 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 281
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 406 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 281
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 406 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 281
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>AF016672-6|AAM34394.2| 165|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform b
protein.
Length = 165
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 560 PPPVHPTDCAVPKNLF 513
P P++PT+C+ PK LF
Sbjct: 107 PVPIYPTNCSFPKCLF 122
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,401
Number of Sequences: 27780
Number of extensions: 312908
Number of successful extensions: 805
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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