Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C16
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931     31   0.71 
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    31   0.94 
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    29   2.2  
12_02_0259 + 16527788-16527842,16528014-16528381                       29   3.8  
11_06_0204 + 21191611-21192807                                         28   5.0  
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395     28   6.6  
06_01_1082 - 8847795-8848033,8848511-8848724                           28   6.6  
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300...    28   6.6  

>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
          Length = 246

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 285 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 395
           L G  +R  WV W   +I AG  G    F+    PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
 Frame = +3

Query: 114 VQFKVRAANDAHIALTTGPQESDPMYEVMIGGWGNAXSVIRKNRTKPDKVEIESP----- 278
           + F+  A ND  + L    Q     Y   +    +   ++  +R K  K+E++       
Sbjct: 33  ITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLKIEVDGKTVVDV 90

Query: 279 ---GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 431
              G+     ++ +W+    G+IS   GR         W DP+P   V YVG+ + W
Sbjct: 91  AGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 273 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 410
           SP +L GG Y G    W+R     I+ G    + P + + D  P  ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259


>12_02_0259 + 16527788-16527842,16528014-16528381
          Length = 140

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 371 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDAXSVS 213
           E +S  +A+ G  +A+P  PK  +F  +       + L+G G   P++  SV+
Sbjct: 68  EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118


>11_06_0204 + 21191611-21192807
          Length = 398

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 177 SDPMYEVMIGGWGNAXSVIRKNRTKPDKVEIESPGILNG 293
           S  +Y    G WG+A ++ R++    D V++  PG+  G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233


>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
          Length = 794

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -1

Query: 382 DQDMNGIASPSRPAEIMPLS-QR----TQKPRYSPPLRIP 278
           D+  +   SP+ PA   P S QR     Q PRY PPLR P
Sbjct: 324 DRAASPARSPASPARRGPQSPQRRVSPAQSPRYQPPLRKP 363


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 405 YYVGVCTGWGATGSWKIEXGAEFDTPDRLXYKF 503
           YYVG   GWG    W +  G  F   D L +K+
Sbjct: 44  YYVGDAAGWGRNLDWWL-AGKTFYAGDVLVFKY 75


>04_04_1230 +
           31929261-31929386,31929497-31929643,31929974-31930065,
           31930159-31930255,31930533-31930576,31930708-31930796,
           31931083-31931174,31931266-31931412,31931539-31931644,
           31931736-31931812,31932281-31932352,31932738-31932865,
           31932947-31933142,31933206-31933407,31933642-31933691
          Length = 554

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 278 GAFNFNLIGLGSIFPDDAXSVSPASNHHLIHRIRFLRAC 162
           G++NF+L  L +   D A +  PAS+  L+  +R  R C
Sbjct: 11  GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,105
Number of Sequences: 37544
Number of extensions: 385117
Number of successful extensions: 1091
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)