Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C16
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical ...    31   0.48 
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical...    28   4.5  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AC024843-9|AAF60836.1|  263|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.9 protein.
          Length = 263

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 361 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPP 203
           A+PS P  I     +T+KP  S P +I   S +  +  +  F  TL + P  P
Sbjct: 186 ANPSLPVHIQTFRVKTRKPVLSRPTKIRFSSEADRNSFIFSFSKTLRSLPDRP 238


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -3

Query: 488 PVRSIEFRSXFDFPGACGTPACADSDVVNWERFRIRPGYEWNSFTLASSGDNAAIPTNPK 309
           P+  +      D P    TP    + V+    F+ +P  +       S  D  ++PT PK
Sbjct: 513 PIEPVVVPKAVDIPAPKPTPVTNTTAVIPKVEFK-KPAAKSLFDDSDSDSDLFSLPTKPK 571

Query: 308 TTIFPSVKNS 279
           T I P  +NS
Sbjct: 572 TPIAPKNRNS 581


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical protein
            C18H2.5 protein.
          Length = 1139

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 56   DVATDDNLQYQFFPAFKWISSVQSQSS 136
            D +TDD L  QF   FK I+S + QSS
Sbjct: 921  DKSTDDKLTNQFMEVFKSIASNEPQSS 947


>AF016427-10|AAB65348.1|  301|Caenorhabditis elegans Hypothetical
           protein F32D1.7 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 400 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSP 293
           G GSGS  D +G + P+R +  +P +     PR  P
Sbjct: 159 GSGSGSGNDSSGSSGPTRMSGQVPSTSGPPPPRPPP 194


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = +2

Query: 47  NVMDVATDDNLQYQFFPAFKWISSVQSQSSE*CPHRAHDRPARIGSYV*GDDWRLGKR 220
           N MD+ T+ +LQ++  P  K+   ++  ++    H    +   +GS+     WRL +R
Sbjct: 388 NCMDIPTNGSLQFEKPPFDKFFIGIKMLNNMTTNHTNLPKIDNVGSFNVNGHWRLIRR 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,798,329
Number of Sequences: 27780
Number of extensions: 304687
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)