Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C15
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     52   1e-07
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    51   4e-07
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    28   2.4  
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     27   4.1  
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533...    27   7.2  
05_07_0144 - 28007477-28008412                                         26   9.6  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     26   9.6  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 37  MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
           M N+ G+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHAS 31


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 50.8 bits (116), Expect = 4e-07
 Identities = 21/31 (67%), Positives = 25/31 (80%)
 Frame = +1

Query: 37  MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
           M N+ G+ VDLY PRKCS +NR+I AKDHAS
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHAS 31


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 29  HIKCXTTPVNSLTCTARGNARPATASST 112
           H++C +TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -2

Query: 204 QTTYILDVSAARPVAGSTSAIT-SCS-*SMVLSVDEAVAGR 88
           Q T IL+ +  +P+  STSAIT +C    M+L +D+ V  R
Sbjct: 510 QITNILEENVVQPLLVSTSAITLACECVRMILKIDDIVTVR 550


>02_05_1007 +
           33452774-33452993,33453028-33453122,33453208-33453329,
           33453392-33453694,33454657-33454918,33455039-33455140,
           33455931-33457151,33457250-33457342
          Length = 805

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 1   VNSRVPCGRTYKMXNDAGEFVDLYCPRKCSASNRLIHAKD 120
           ++S V     YK  +D  +  DL+ P +C  + + IH KD
Sbjct: 72  ISSGVEDAAGYKQPSDP-QMKDLFLPFRCFCTRKDIHCKD 110


>05_07_0144 - 28007477-28008412
          Length = 311

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -2

Query: 282 FLASIPSXFVNLTMQSSDSP---ILRIAPQTTYILDVSAARPVAGSTSA 145
           F   +   F++L+  SS SP     ++APQTT I   ++A  V  STSA
Sbjct: 29  FREEVAPGFLSLS-PSSVSPGDAAAQLAPQTTTITTSNSAAAVGNSTSA 76


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 131 AEAWSLAWMRRLLAEHFLGQYKSTNSPASXCILYVRPHGT 12
           AE  +L W+RR     + GQ  S +     C++  R  GT
Sbjct: 22  AEVGALVWVRRRNGSWWPGQILSADELPENCVVPPRSSGT 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,829,113
Number of Sequences: 37544
Number of extensions: 158041
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)