Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C15
(397 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21 pro... 66 4e-11
CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein. 66 4e-11
BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21 p... 66 4e-11
AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21 p... 66 4e-11
AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21 p... 66 4e-11
AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21 p... 66 4e-11
BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein. 62 5e-10
X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation f... 61 1e-09
BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein. 61 1e-09
AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21 p... 61 1e-09
AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21 p... 61 1e-09
AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21 p... 54 2e-07
>L04483-1|AAA99893.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 66.1 bits (154), Expect = 4e-11
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKNY 286
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>CR542132-1|CAG46929.1| 83|Homo sapiens RPS21 protein.
Length = 83
Score = 66.1 bits (154), Expect = 4e-11
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKNY 286
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC021990-1|AAH21990.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 66.1 bits (154), Expect = 4e-11
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKNY 286
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AL121832-3|CAC21458.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 66.1 bits (154), Expect = 4e-11
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKNY 286
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AJ250907-1|CAB83213.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 66.1 bits (154), Expect = 4e-11
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKNY 286
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AB061843-1|BAB79481.1| 83|Homo sapiens ribosomal protein S21
protein.
Length = 83
Score = 66.1 bits (154), Expect = 4e-11
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKNY 286
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL DGI++KN+
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSKNF 83
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC018140-1|AAH18140.1| 81|Homo sapiens RPS21 protein protein.
Length = 81
Score = 62.5 bits (145), Expect = 5e-10
Identities = 28/50 (56%), Positives = 36/50 (72%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTXKDGILAK 280
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL DGI++K
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRLAKADGIVSK 81
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>X79563-1|CAA56100.2| 97|Homo sapiens 8.2 kDa differentiation
factor protein.
Length = 97
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>BC027976-1|AAH27976.1| 66|Homo sapiens RPS21 protein protein.
Length = 66
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AL121832-2|CAC29248.1| 90|Homo sapiens ribosomal protein S21
protein.
Length = 90
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
Score = 37.9 bits (84), Expect = 0.012
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRM 223
+Q+ +A+VD TGR K Y +CGAIRRM
Sbjct: 32 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRM 62
>AL121832-1|CAC29247.1| 66|Homo sapiens ribosomal protein S21
protein.
Length = 66
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 37 MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
M NDAGEFVDLY PRKCSASNR+I AKDHAS
Sbjct: 1 MQNDAGEFVDLYVPRKCSASNRIIGAKDHAS 31
>AB007157-1|BAA25821.1| 54|Homo sapiens ribosomal protein S21
protein.
Length = 54
Score = 54.0 bits (124), Expect = 2e-07
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +2
Query: 131 LQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDDCIVRL 253
+Q+ +A+VD TGR K Y +CGAIRRMGESDD I+RL
Sbjct: 12 IQMNVAEVDKVTGRFNGQFKTYAICGAIRRMGESDDSILRL 52
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,270,872
Number of Sequences: 237096
Number of extensions: 818185
Number of successful extensions: 1581
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1581
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2813442310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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