Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C15
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal prot...    60   4e-10
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    27   6.4  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeo...    27   6.4  
AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protei...    27   6.4  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U00033-12|AAC48297.2|   88|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 21 protein.
          Length = 88

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
 Frame = +2

Query: 131 LQLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKN 283
           +Q+   DVDP TGR     S  Y +CGAIRRMGESDD I+RL  KDG++ ++
Sbjct: 32  VQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83



 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 37  MXNDAGEFVDLYCPRKCSASNRLIHAKDHAS 129
           M NDAG+ V+LY PRKCS+SNR+I  KDHAS
Sbjct: 1   MQNDAGQTVELYVPRKCSSSNRIIGPKDHAS 31


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +2

Query: 44  TTPVNSLTCTARGNARPATASSTLRTMLQLQLVIADVDPATGRAADTS 187
           TTP  + T T        T++ST  +++    V +  +P T  +  T+
Sbjct: 263 TTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTT 310


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 122 WSLAWMRRLLAEHFLGQYKS 63
           W++AW+RR++ E   G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378


>U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeobox
           protein 21 protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 35  KCXTTPVNSLTCTARGNARPATASSTLRTMLQLQLVIA--DVDPATGRAADTSKM 193
           K  TTP  S   T R ++    ASST  + +     ++  D     GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249


>AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protein
           protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 35  KCXTTPVNSLTCTARGNARPATASSTLRTMLQLQLVIA--DVDPATGRAADTSKM 193
           K  TTP  S   T R ++    ASST  + +     ++  D     GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 235  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 140
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 235  IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 140
            +RL+  +DS T    FR      CG +Y  NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,348,336
Number of Sequences: 27780
Number of extensions: 126020
Number of successful extensions: 367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)