Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C15
         (397 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   9.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 167  GRAADTSKMYVVCGAIRRMGESD 235
            GR  +++K YVV   +   GES+
Sbjct: 1182 GRGIESAKSYVVDVRVHVPGESE 1204


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 239 NHQTLPSFG*PHRQH 195
           NH   P+ G PH  H
Sbjct: 340 NHTMGPTMGPPHHHH 354


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 2   SIPVYRVDVHIKCXTTPVNSLTCTARGNARPATAS 106
           +IP  ++D   KC    + S+  T+     P  A+
Sbjct: 391 NIPSVKIDEDQKCSIESITSVNSTSSPKPFPRRAT 425


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,709
Number of Sequences: 438
Number of extensions: 1674
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)