Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C14
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 180 2e-46
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 142 4e-35
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 131 7e-32
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 130 2e-31
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 121 8e-29
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 113 3e-26
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 95 6e-21
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 95 1e-20
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 56 4e-09
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 4.1
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.2
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 9.5
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.5
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 180 bits (438), Expect = 2e-46
Identities = 84/130 (64%), Positives = 108/130 (83%)
Frame = +3
Query: 168 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV 347
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ GEV +TNDGATILK +SV
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
Query: 348 IHPAAKMLVXLSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQL 527
+HPAAKMLV LS AQD+EAGDGTTSVV++AG++L A KLL+KGIHPTVI++ FQ+A
Sbjct: 71 LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGF 130
Query: 528 ALXVVENMSL 557
+ ++ +L
Sbjct: 131 TVDCMKENAL 140
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 527 GFTXG--RKYVTPVDLNNEXXXXXXXXTSLNSKVXPQHSTILAP 652
GFT ++ ++L++ TSLNSK+ Q+S +LAP
Sbjct: 129 GFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAP 172
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 142 bits (344), Expect = 4e-35
Identities = 68/117 (58%), Positives = 92/117 (78%)
Frame = +3
Query: 204 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVXLS 383
S+I A K VA+ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H AK+LV LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 384 RAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALXVVENMS 554
++QD E GDGTT VVV+AGALL+ A L+ KGIHP I+DG++KA Q+A+ ++ +S
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAIS 154
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 131 bits (317), Expect = 7e-32
Identities = 66/135 (48%), Positives = 92/135 (68%)
Frame = +3
Query: 153 LILQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATIL 332
++L+ D S+ LSNINA AV D IRT+LGP G DK++ GEV I+NDGATI+
Sbjct: 11 IVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIM 70
Query: 333 KQMSVIHPAAKMLVXLSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQ 512
K + ++HPAAK LV ++RAQD E GDGTTSVVV AG LL A ++ G+ +I G++
Sbjct: 71 KLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYR 130
Query: 513 KALQLALXVVENMSL 557
KA QLA+ ++ +++
Sbjct: 131 KAAQLAVNKIKEIAI 145
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 130 bits (313), Expect = 2e-31
Identities = 62/120 (51%), Positives = 87/120 (72%)
Frame = +3
Query: 198 RLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVX 377
++SNI AAKAVAD IRT LGPR M KM+ G V +TNDG IL+++ V HPAAK ++
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80
Query: 378 LSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALXVVENMSL 557
L+R QD E GDGTTSV+++AG +L +A LL + IHP V+ F++AL+ AL +++ ++L
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 121 bits (292), Expect = 8e-29
Identities = 61/125 (48%), Positives = 86/125 (68%)
Frame = +3
Query: 159 LQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQ 338
L L +K D+R N+ A A+A+ +++SLGP G+DKM+ G+VT+TNDGATIL
Sbjct: 10 LFLSGEKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSL 69
Query: 339 MSVIHPAAKMLVXLSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKA 518
+ V HPA K+LV L++ QD E GDGTTSVV+IA LL A +L++ IHPT I G++ A
Sbjct: 70 LDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLA 129
Query: 519 LQLAL 533
++ A+
Sbjct: 130 IREAV 134
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 113 bits (271), Expect = 3e-26
Identities = 56/121 (46%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Frame = +3
Query: 198 RLSNINAAKAVADAIRTSLGPRGMDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLV 374
RLS+ A AV D ++++LGP+GMDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81
Query: 375 XLSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALXVVENMS 554
+S+ QD E GDGTTSV V A LL A ++ IHP VI DG++ A + A+ + S
Sbjct: 82 NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141
Query: 555 L 557
+
Sbjct: 142 I 142
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 95.5 bits (227), Expect = 6e-21
Identities = 47/134 (35%), Positives = 79/134 (58%)
Frame = +3
Query: 150 KLILQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATI 329
+L + Y+ D + N NA + +++ RTSLGP G +K++ + +TND ATI
Sbjct: 12 QLFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATI 71
Query: 330 LKQMSVIHPAAKMLVXLSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGF 509
++++ VIHPAAK++V ++ Q+ E GD VVV G LL A +++ G+ P I+ G+
Sbjct: 72 IRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGY 131
Query: 510 QKALQLALXVVENM 551
+ AL + V+E +
Sbjct: 132 EMALSHTMEVLEEI 145
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 94.7 bits (225), Expect = 1e-20
Identities = 44/114 (38%), Positives = 70/114 (61%)
Frame = +3
Query: 207 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVXLSR 386
NI+AA + D ++++LGP G KM+ G + +T DG +L +M + +P A + +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 387 AQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALXVVEN 548
AQD GDGTTSV ++ G LL A +++G+HP++ISDGF A AL +++
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDS 134
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 56.0 bits (129), Expect = 4e-09
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Frame = +3
Query: 171 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV- 347
KD D R S + +A A+ +LGP+G + +I G IT DG T+ + +S+
Sbjct: 35 KDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLK 94
Query: 348 ---IHPAAKMLVXLSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKA 518
+ A+++ ++ + AGDGTT+ V+ A+ + + G +P + G Q A
Sbjct: 95 DKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLA 154
Query: 519 L 521
+
Sbjct: 155 V 155
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 341 ECYSSSCKNVGXIISCSRY*SW*WNNISSCYCWCVVGF 454
EC S K+ +I+C R+ S+ N I S Y +GF
Sbjct: 87 ECLLSGGKSFAKVINCLRFPSFLINFIFSVYQTSALGF 124
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 7.2
Identities = 29/116 (25%), Positives = 43/116 (37%)
Frame = +3
Query: 180 SKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPA 359
+K D + A AD + TS M + + ANG+ + S HPA
Sbjct: 1859 TKNRDSLYQKLVARAPGADVLSTSHFATSMSRDLGKANGKSNFLSSKLANALSFSTTHPA 1918
Query: 360 AKMLVXLSRAQDIEAGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQL 527
K ++I + V +AG + L Q + P VI+D K L L
Sbjct: 1919 TKRW----ERREISNFNYLQIVNTLAGRTYND---LTQYPVFPWVIADYTSKELDL 1967
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = -1
Query: 407 TSFNILSTR*XYQHFCSWMNNTHLFQN-----CCSI-ISYCNFSIGCLNHLIH 267
T N+ + + Y HF S + QN C + +SY + ++G L HL+H
Sbjct: 681 TLVNVETVKVNYNHFTSISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVH 733
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -2
Query: 436 AITTTDVVPSPASIS*ARDNXTNIFAAG*ITLICFKIVAPSLVIVTSPLAA*IILSI 266
A+ + + P P + S RD+ I A I LI F + +L+ + P+A II ++
Sbjct: 512 ALVRSMIFPKPTNFSFYRDSFRFITAMFIIALIGFVFSSINLLTLGVPIATIIIRAL 568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,203,460
Number of Sequences: 5004
Number of extensions: 38925
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -