Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C14
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   7.9  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   7.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 159 LQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 263
           ++ Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 490 IRQYRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 159 LQLYKDKSKPTDIRLSNINAAKAVADAIRTSLGPR 263
           ++ Y+   KP +  ++ INA K +  AIR  +GP+
Sbjct: 490 IRQYRLNHKPFNFHIT-INADKPMKAAIRIFIGPK 523


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 297 EVTITNDGATILKQMSVIHPAAKMLVXLSRAQDI 398
           E+ + NDG+  L ++ +IH A        R QD+
Sbjct: 358 EIRVFNDGSLYLTKVQLIH-AGNYTCHAVRNQDV 390


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 598 SCLEQSXFIIQVHWSDIFSTTCK 530
           SCL       + H ++ F T CK
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCK 76


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 598 SCLEQSXFIIQVHWSDIFSTTCK 530
           SCL       + H ++ F T CK
Sbjct: 54  SCLTPDSVFFKSHITEAFQTQCK 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,164
Number of Sequences: 438
Number of extensions: 2607
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)