Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C12
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    27   0.92 
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   1.6  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   2.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   6.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   6.5  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    24   8.6  

>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 27.5 bits (58), Expect = 0.92
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 212 QSHTLGQRTTCTPPESCSKVXKEXLTNM-HENHQLLIYVXL 331
           QSH L    + TP  +   + +E L+NM H NH +L YV +
Sbjct: 270 QSHPLSSVASGTPSANAI-LLEELLSNMLHANHPILDYVLM 309


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 344 VIYCTIXHKLIVDDFHACWLXIPXSLWNSFLEVCRSSVGPRCDSDVRFVTFQRLCSKFL 168
           +++ T  +KL  D  H   L IP S    F+E   + V   CD D      + LC ++L
Sbjct: 207 ILWDTSDNKLGTDGTHVQELPIPESHMERFIEARNALVMSLCDVD------ETLCDEYL 259


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 153  EAPWLRCLSSLCKLNQLASKRSFC 82
            +AP L  LS++C  +  + KR FC
Sbjct: 967  DAPALSLLSAVCAYDYASDKRKFC 990


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 193 NVTNLTSESHLGPTDDLHTSRKLFQS 270
           +V+ L+S SHL PT    +S +L+ S
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPS 254


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 144 KVLRRSLKQEFRAXALKRDESHVRVTPWANGRPAHL 251
           K  + S  + FR     RD+   +  P +N  P HL
Sbjct: 224 KEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHL 259


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 189 TPXLEILALVTCEAPWLRCLSSLCKLN 109
           TP   + + VT + PWL  L   CK N
Sbjct: 207 TPGTILPSTVTVKTPWLSVLPFNCKKN 233


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 57  RIKVNKNINKMSAWRQAGLT 116
           +I + K I+ +  WRQ GLT
Sbjct: 277 QITLKKQISDLQEWRQMGLT 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,698
Number of Sequences: 5004
Number of extensions: 19979
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)