Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C10
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 229 3e-61
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 229 3e-61
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 27 2.3
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 4.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 5.4
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 7.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.2
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 7.2
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.2
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 229 bits (560), Expect = 3e-61
Identities = 101/124 (81%), Positives = 111/124 (89%)
Frame = +2
Query: 41 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 220
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 221 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 400
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 401 KPQG 412
KP G
Sbjct: 121 KPNG 124
Score = 88.6 bits (210), Expect = 7e-19
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +3
Query: 417 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFXXLR 596
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VS KWGF++Y RDE+ R
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 597 EXGRLANDGCIVQY 638
G + DGC ++
Sbjct: 186 SRGEIIPDGCYAKF 199
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 229 bits (560), Expect = 3e-61
Identities = 101/124 (81%), Positives = 111/124 (89%)
Frame = +2
Query: 41 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 220
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 221 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 400
+SEALEA RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120
Query: 401 KPQG 412
KP G
Sbjct: 121 KPNG 124
Score = 88.2 bits (209), Expect = 9e-19
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +3
Query: 417 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDEFXXLR 596
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VS KWGF++Y RDE+ R
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKR 185
Query: 597 EXGRLANDGCIVQY 638
G + DGC ++
Sbjct: 186 SRGEIIPDGCYAKF 199
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 65 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 241
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 242 G 244
G
Sbjct: 94 G 94
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 454 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQXSGVSQSMNVMSLXXCVXRAAS 612
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 484 SSRLCAVPSSSSPDVKRSTYQXSGVS 561
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 143 DLGKKRANVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 286
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 98 SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 208
S FC PDPK K A+ DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 122 DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 241
DPK+R+F KRA + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 284 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 388
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 4 LSEVVVSLCKDHHGAPASEMLPVLQK*TVSEIEVLSGC 117
LS+ ++ K H G E++P + IE L GC
Sbjct: 146 LSDFSIAWSKQHPGEEVQELIPQIGTGHYRAIETLFGC 183
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 108 VGVYLIPRSVSSIWV 152
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 436 PMRTRXTVALRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHAD 299
P + +LAKR T PSL P S+ H I + ++ KS A+
Sbjct: 950 PRSEPVSTTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAN 996
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,409
Number of Sequences: 5004
Number of extensions: 61729
Number of successful extensions: 196
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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