Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C10
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         60   1e-09
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.62 
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)                   30   1.4  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          29   3.3  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    29   3.3  
SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)             29   4.3  
SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)               28   5.7  
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              28   7.6  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = +3

Query: 408 RATVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 533
           + TV RV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 9   QGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +2

Query: 233 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 412
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S   ++          G P  
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS--NSEEFAKAFSCPRGSPMN 169

Query: 413 YCXTCSHW 436
               C  W
Sbjct: 170 PEHKCEMW 177


>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
          Length = 248

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 32/115 (27%), Positives = 41/115 (35%), Gaps = 8/115 (6%)
 Frame = -3

Query: 425 TXYSSPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEV--SCGY-GTDPFRSSLRGTY- 258
           T YSS     +   + S  Y+   T T Y  G RG      S GY GT    +   G+Y 
Sbjct: 109 TAYSSGYRETSTTTAYSSGYRGTPTTTAYSSGYRGTSTTTYSSGYRGTSTTTAYSSGSYS 168

Query: 257 -CSRYVLP---PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDR 105
            C    L    P           TP+A T  S        P+ R G+W     D+
Sbjct: 169 SCPSRTLSGCFPATSFGGTTTTTTPAATTTPSAYTRACGSPSSRIGAWRSAKRDK 223


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 236 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 120
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +2

Query: 68  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 247
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 248 IC 253
           +C
Sbjct: 500 MC 501


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 421 HVFALDNPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQXSGVSQSMNVMS 582
           HV A  +P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314


>SB_10713| Best HMM Match : Peptidase_C32 (HMM E-Value=3.3)
          Length = 615

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = +1

Query: 280 RKGSVPYPHET--SPFPRYPHQ*NVIVRW 360
           +KGS+ +PH +  S +P+YP   +++VR+
Sbjct: 101 KKGSIRFPHSSASSDYPQYPEGRDLVVRF 129


>SB_53724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/60 (33%), Positives = 33/60 (55%)
 Frame = -3

Query: 611 EAALFTQXXKLITFILCETPLX*YVDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSN 432
           EA +  +  KL++F L        V++L    +   TA ++D  C+P ++RA G DGLS+
Sbjct: 72  EAEMMKEGQKLVSF-LYPAQNKDLVEILKKRNI---TAFAVD--CIPRISRAQGFDGLSS 125


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 344 MLSCAGADRLQTGMRGAFGKPQGYCXTCS 430
           M   AG D +  G RG F  P G C +C+
Sbjct: 338 MTGDAGRDGVAEGRRGTFMSPVGACLSCT 366


>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
          Length = 450

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
 Frame = -3

Query: 323 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 174
           G    + GY   P+ + S R  Y +   LPP+    P SS + ++  P   + E+     
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418

Query: 173 -----RQRSLSSYPNRRYGSWDQVHPDR 105
                RQ    SY +RRYG ++  +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 208 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 80
           FVGH +   ++V+N+     Q+ DT +G+ + P +    +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,920,989
Number of Sequences: 59808
Number of extensions: 526521
Number of successful extensions: 1592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)