Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C08
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    75   4e-15
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    75   4e-15
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    24   9.0  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   9.0  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    24   9.0  

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 37/60 (61%), Positives = 42/60 (70%)
 Frame = +2

Query: 251 GKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSNS 430
           GKVHGSLARAGKVK QTPKVEKQ+K     GRA + + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 75.4 bits (177), Expect = 4e-15
 Identities = 37/60 (61%), Positives = 42/60 (70%)
 Frame = +2

Query: 251 GKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSNS 430
           GKVHGSLARAGKVK QTPKVEKQ+K     GRA + + Y RRFVNV    G +R  N +S
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 130 STNAFLDLTNGLLAIDVQYVCRLPXDMQLHSCKIV 26
           S   F+D +  + ++D +++ RL  D+ L   KI+
Sbjct: 401 SREPFIDFSANISSVDQRFLRRLCNDLHLSFSKII 435


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 127 TNAFLDLTNGLLAIDVQYVCRLPXDMQLHSCKIVI 23
           TN FL +T  LL + V ++C       L S K+ I
Sbjct: 183 TNTFLSITIALLFLMVGWLCDTVGKSSLFSYKVRI 217


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 327 FFCCFSTLGVCPLTLPAR 274
           FFCC S +GV  +  P R
Sbjct: 335 FFCCLSAVGVLHMLNPFR 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,599,809
Number of Sequences: 5004
Number of extensions: 26112
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)