Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C08
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           85   2e-17
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492...    32   0.18 
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376...    30   0.95 
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483...    30   0.95 
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    28   2.9  
11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229     27   8.8  
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20...    27   8.8  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 39/59 (66%), Positives = 45/59 (76%)
 Frame = +2

Query: 251 GKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPNSN 427
           GKVHGSLARAGKV+GQTPKV KQ K     GRA + + YNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>04_04_0165 +
           23247265-23247472,23248115-23248407,23249182-23249239,
           23249302-23250014
          Length = 423

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 91  PGVHWSDQGTHSYSCCSWR*RPYSIIMWS 177
           PG+HW++Q    YS CS    P  I MW+
Sbjct: 378 PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406


>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
            3764013-3764961,3766967-3767064,3768144-3768284,
            3768758-3768874,3768924-3769013,3769014-3771818
          Length = 1632

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 136  SKSTNAFLDLTNGLLAIDVQYVCRLPXDMQLHSC 35
            S + N+ LD T+  ++ D Q V  LP D   HSC
Sbjct: 1455 SANKNSLLDQTSENVSTDHQEVSMLPQDQHYHSC 1488


>02_02_0664 -
           12747888-12747900,12748161-12748229,12748332-12748395,
           12749540-12749558,12749777-12749843,12749934-12749953,
           12750079-12750248,12751646-12751823
          Length = 199

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 82  RQWPGVHWSDQGTHSY 129
           R WPG+HWSD  T  Y
Sbjct: 51  RIWPGLHWSDSSTPLY 66


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 5   DLSGLVDNDFTTMQLHIXGQSTHVLDVNGQESIGQIKE 118
           DLSGL+ +D ++   +  G +  V+D +     GQI E
Sbjct: 464 DLSGLIPSDLSSSPFYSRGSTLLVVDFSHNNLTGQIPE 501


>11_06_0072 + 19813912-19815234,19815314-19815661,19816002-19816229
          Length = 632

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = +2

Query: 2   VDLSGLVDNDFTTMQLHIXGQSTHVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAP 181
           +DL  + DNDF  +  H       + D+     + +I ERI     +G   L   + G+ 
Sbjct: 344 IDLENMKDNDFLALFKHYAFSGAVIRDLQLHGKLEEIAERI--CKRLGKSPLAAKVVGSQ 401

Query: 182 L 184
           L
Sbjct: 402 L 402


>02_01_0033 +
           202703-202705,203397-203458,203566-203665,203875-203916,
           204264-204305,204437-204589,206559-207221
          Length = 354

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 377 IFCCXELYA*HGQXXXXFF-VVFPLWGFVL*LYLHEPKIRALYHQAMAL*GLV 222
           I C   +YA  G+          P WG V  L L  P  + ++HQ++A  G +
Sbjct: 259 IQCADHVYAPKGRCIDWGIGQPLPSWGEVKDLQLQAPCYQGMFHQSVACPGFI 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,425
Number of Sequences: 37544
Number of extensions: 184847
Number of successful extensions: 440
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)