Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C08
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    90   8e-19
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    31   0.37 
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    31   0.37 

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 89.8 bits (213), Expect = 8e-19
 Identities = 42/63 (66%), Positives = 48/63 (76%)
 Frame = +2

Query: 242 LLGGKVHGSLARAGKVKGQTPKVEKQQKXXXXTGRAKRTIXYNRRFVNVVQTFGRRRGPN 421
           LLGGKVHGSLARAGKV+ QTPKV+KQ K     GRA R + Y RR+VNV    G++RGPN
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127

Query: 422 SNS 430
           SNS
Sbjct: 128 SNS 130


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 340 WPC*AYNSXQQKICQRCAD 396
           WPC  Y+S ++K+C  C D
Sbjct: 269 WPCFPYSSWKEKLCSECVD 287


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 31.1 bits (67), Expect = 0.37
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 340 WPC*AYNSXQQKICQRCAD 396
           WPC  Y+S ++K+C  C D
Sbjct: 231 WPCFPYSSWKEKLCSECVD 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,178,312
Number of Sequences: 27780
Number of extensions: 155690
Number of successful extensions: 347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)