Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C07
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    79   3e-16
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   1.6  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 79.0 bits (186), Expect = 3e-16
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +1

Query: 154 GCYKITTXFSHAQRVVVCAGCSTILCQPTGGRATLTEGCSFRRK 285
           GC+ ITT FSHAQ VV+C  C+++LCQPTGG+A L EGCSFRRK
Sbjct: 39  GCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82



 Score = 29.1 bits (62), Expect = 0.30
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 120 PNSYFMDVKCPG 155
           P S+FMDVKCPG
Sbjct: 28  PRSFFMDVKCPG 39


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 32  PLPARNLICCILP 70
           PLP   L+CC+LP
Sbjct: 88  PLPPNGLVCCVLP 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,849
Number of Sequences: 5004
Number of extensions: 26727
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)