Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C07
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...    84   5e-17
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     28   2.7  
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    28   2.7  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    28   3.6  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 34/44 (77%), Positives = 38/44 (86%)
 Frame = +1

Query: 154 GCYKITTXFSHAQRVVVCAGCSTILCQPTGGRATLTEGCSFRRK 285
           GC+ ITT FSH+Q VVVC GC T+LCQPTGG+A LTEGCSFRRK
Sbjct: 41  GCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRK 84



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 120 PNSYFMDVKCPG 155
           PNS+FMDVKC G
Sbjct: 30  PNSFFMDVKCQG 41


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 120 PNSYFMDVKCPG 155
           PNS+FMDVKC G
Sbjct: 30  PNSFFMDVKCQG 41


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +3

Query: 120 PNSYFMDVKCPG 155
           PNS+FMDVKC G
Sbjct: 30  PNSFFMDVKCQG 41


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 187 AQRVVVCAGCSTILCQPTGGRATLTEGCS 273
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,803
Number of Sequences: 37544
Number of extensions: 195467
Number of successful extensions: 354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)