Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C07
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...    83   6e-17
U28993-5|AAV58873.1|  298|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical ...    27   5.6  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    26   9.8  

>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score = 83.4 bits (197), Expect = 6e-17
 Identities = 40/80 (50%), Positives = 49/80 (61%)
 Frame = +1

Query: 49  LDLLHPSPALGXXXXXXXXXSCHILTLISWMLSAXGCYKITTXFSHAQRVVVCAGCSTIL 228
           +DLLHP P              H  +     +   GC+KI+T FSHA  VVVC GC+T+L
Sbjct: 5   VDLLHPEPQREIRCHKLKRLVQHPNSYFM-DVKCSGCFKISTVFSHATTVVVCVGCNTVL 63

Query: 229 CQPTGGRATLTEGCSFRRKQ 288
           CQPT G+A LTEGCSFR+KQ
Sbjct: 64  CQPTRGKAKLTEGCSFRKKQ 83


>U28993-5|AAV58873.1|  298|Caenorhabditis elegans Hypothetical
           protein F22D3.2c protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 136 WMLSAXGCYKITTXFSHAQRVVVCAGC 216
           WML A  CY++T   SH Q      GC
Sbjct: 236 WMLKAKICYQMTKQLSHPQVFEHITGC 262


>U28993-3|AAT81196.1|  635|Caenorhabditis elegans Hypothetical
           protein F22D3.2b protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 136 WMLSAXGCYKITTXFSHAQRVVVCAGC 216
           WML A  CY++T   SH Q      GC
Sbjct: 573 WMLKAKICYQMTKQLSHPQVFEHITGC 599


>U28993-2|AAK31497.1|  720|Caenorhabditis elegans Hypothetical
           protein F22D3.2a protein.
          Length = 720

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 136 WMLSAXGCYKITTXFSHAQRVVVCAGC 216
           WML A  CY++T   SH Q      GC
Sbjct: 658 WMLKAKICYQMTKQLSHPQVFEHITGC 684


>AF016452-1|AAB66013.1|  511|Caenorhabditis elegans Hypothetical
           protein T05H4.7 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 120 PNSYFMDVKCPGLLQDYNXF*SRTESGGLRWMLNDPLSTHWWPC 251
           PNS F+    PG    ++ F  +  +   R+  +DP+   W+PC
Sbjct: 218 PNSTFLSPAAPG----FSPFDGKRCTDEGRYCKSDPIIDFWYPC 257


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 73  QGKDATNQVASGQWLQHLM 17
           +G DA NQ+   QW QH +
Sbjct: 323 EGSDAYNQLLHDQWTQHFL 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,168,722
Number of Sequences: 27780
Number of extensions: 160272
Number of successful extensions: 255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)