Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C07
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   2.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   4.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 198 GGLRWMLNDPLSTHWWPCY 254
           G +RW L   L+  W  CY
Sbjct: 203 GSIRWELAGTLAVVWIMCY 221


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 198 GGLRWMLNDPLSTHWWPCY 254
           G +RW L   L+  W  CY
Sbjct: 256 GSIRWELAGTLAVVWIMCY 274


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = +1

Query: 334 FFSN---LYNGXIFXKFTTMDPSDHYK 405
           FFS    L N   F  FT   PSDHY+
Sbjct: 241 FFSTSPELSNKQRFEYFTRTIPSDHYQ 267


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 177 F*SRTESGGLRWMLNDPLSTHWW 245
           F  R  +G  +W++N+     WW
Sbjct: 24  FLKRPITGDEKWVVNNIKRKRWW 46


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 198 GGLRWMLNDPLSTHWWPCY 254
           G +RW L   L   W  CY
Sbjct: 170 GNIRWELAGTLLLVWILCY 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,903
Number of Sequences: 438
Number of extensions: 1954
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)