Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C02
         (644 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.8  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   3.8  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   3.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   5.0  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   6.6  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 369 PALQGYRRCLRPYP 410
           P +  YR C RPYP
Sbjct: 251 PYVPFYRYCYRPYP 264


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 139 FRDPPSAXCRNSHLDIFT 192
           FRDP +    N+ L++FT
Sbjct: 320 FRDPNTGFMTNTPLEVFT 337


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 139 FRDPPSAXCRNSHLDIFT 192
           FRDP +    N+ L++FT
Sbjct: 320 FRDPNTGFMTNTPLEVFT 337


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 369 PALQGYRRCLRPYPQGAGSPFILAW*LRQRHQVLPDPGAQLRLQGQVQAGVPRRVLTRRR 548
           P+L   R  L PYPQ   + ++ +  L Q +Q+     A +R    V     R + + +R
Sbjct: 27  PSLSDTRPML-PYPQNYINSYLFSLSLAQNNQLFTHHKAPIR---PVALPPKREIPSPKR 82

Query: 549 SSGV 560
           SS +
Sbjct: 83  SSPI 86


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 556 PELRLLVNTRRGTPACTC 503
           PE  LLV+T+R T +  C
Sbjct: 19  PETELLVSTKRSTISQGC 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,323
Number of Sequences: 336
Number of extensions: 2750
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)