Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C01
(496 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7; Eukaryo... 173 1e-42
UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65; Eukary... 169 4e-41
UniRef50_P26781 Cluster: 40S ribosomal protein S11; n=73; Eukary... 148 6e-35
UniRef50_P79013 Cluster: 40S ribosomal protein S11; n=2; Dikarya... 144 1e-33
UniRef50_A0BVQ1 Cluster: Chromosome undetermined scaffold_130, w... 140 2e-32
UniRef50_Q9U9A0 Cluster: Putative ribosomal protein S11; n=8; Eu... 127 2e-28
UniRef50_Q4QCN7 Cluster: Ribosomal protein s11 homolog; n=16; Eu... 124 1e-27
UniRef50_Q15GB4 Cluster: 60S ribosomal protein 11; n=1; Rhodomon... 119 3e-26
UniRef50_Q7XLC9 Cluster: OSJNBa0070C17.20 protein; n=11; Eukaryo... 113 2e-24
UniRef50_Q8SS53 Cluster: 40S RIBOSOMAL PROTEIN S11; n=1; Encepha... 105 5e-22
UniRef50_Q42068 Cluster: Ribosomal protein 40S-S11; n=1; Arabido... 93 2e-18
UniRef50_Q3LW88 Cluster: Ribosomal protein S11; n=1; Bigelowiell... 85 8e-16
UniRef50_Q8TW21 Cluster: 30S ribosomal protein S17P; n=24; Archa... 71 2e-11
UniRef50_A3H7C0 Cluster: Ribosomal protein S17; n=4; Thermoprote... 67 2e-10
UniRef50_Q9HIR8 Cluster: 30S ribosomal protein S17P; n=3; Euryar... 65 7e-10
UniRef50_Q2QAS1 Cluster: Ribosomal protein S17; n=2; environment... 64 2e-09
UniRef50_Q8PV41 Cluster: 30S ribosomal protein S17P; n=5; Methan... 64 2e-09
UniRef50_P12741 Cluster: 30S ribosomal protein S17P; n=8; Euryar... 63 3e-09
UniRef50_Q9YF81 Cluster: 30S ribosomal protein S17P; n=4; Thermo... 59 5e-08
UniRef50_Q8ZWL3 Cluster: 30S ribosomal protein S17P; n=3; Pyroba... 58 1e-07
UniRef50_A1RXG3 Cluster: Ribosomal protein S17; n=1; Thermofilum... 50 4e-05
UniRef50_Q8TP90 Cluster: Putative 30S ribosomal protein S17P-lik... 50 4e-05
UniRef50_Q59NQ3 Cluster: Putative uncharacterized protein; n=1; ... 49 7e-05
UniRef50_Q74NJ4 Cluster: 30S ribosomal protein S17P; n=1; Nanoar... 48 2e-04
UniRef50_A0RVY2 Cluster: Ribosomal protein S17; n=2; Thermoprote... 44 0.002
UniRef50_UPI0000D9F1CD Cluster: PREDICTED: similar to ribosomal ... 43 0.003
UniRef50_Q601K5 Cluster: 30S ribosomal protein S17; n=4; Mycopla... 36 0.38
UniRef50_Q5P323 Cluster: 30S ribosomal protein S17; n=130; Bacte... 36 0.38
UniRef50_UPI00006CFC97 Cluster: ribosomal protein S17 containing... 35 0.87
UniRef50_A4M9T1 Cluster: 30S ribosomal protein S17; n=2; Bacteri... 34 1.5
UniRef50_Q7M8E2 Cluster: 30S ribosomal protein S17; n=11; Epsilo... 34 2.0
UniRef50_Q9UUB0 Cluster: Mitochondrial ribosomal protein subunit... 33 2.7
UniRef50_P38519 Cluster: 30S ribosomal protein S17; n=7; Bacteri... 33 2.7
UniRef50_UPI00001F8C9C Cluster: PREDICTED: hypothetical protein;... 33 3.5
UniRef50_O66439 Cluster: 30S ribosomal protein S17; n=1; Aquifex... 33 3.5
UniRef50_Q01WA1 Cluster: 30S ribosomal protein S17; n=3; Bacteri... 32 6.1
>UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7;
Eukaryota|Rep: 40S ribosomal protein S11 - Triatoma
infestans (Assassin bug)
Length = 194
Score = 173 bits (422), Expect = 1e-42
Identities = 82/106 (77%), Positives = 90/106 (84%)
Frame = +1
Query: 43 KRFRNRPPLFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRI 222
K F+ +P +FL K K K +R +K+VGLGFKTP EAIEGTYIDKKCPFTGNVSIRGRI
Sbjct: 50 KAFQKQPHVFLASKVSSK-KPLRRYKSVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRI 108
Query: 223 LTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 360
LTGVVQKM M RTIVIRRDYLHY+ KYNRF KRH+NMSVHLSPCFR
Sbjct: 109 LTGVVQKMKMQRTIVIRRDYLHYVRKYNRFEKRHKNMSVHLSPCFR 154
Score = 55.6 bits (128), Expect = 6e-07
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
VEIGD+VT+GECRPLSKTVRFNVLKV
Sbjct: 156 VEIGDVVTVGECRPLSKTVRFNVLKV 181
Score = 42.3 bits (95), Expect = 0.006
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = +1
Query: 43 KRFRNRPPLFLNRKGGM----KRKDMRHHKNVGLGFKTPXE 153
+ F+ +P +FLNRK G+ K +R+ +NVGLGFKTP E
Sbjct: 7 RSFQKQPTIFLNRKKGLGVKKKANALRYIRNVGLGFKTPRE 47
>UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65;
Eukaryota|Rep: 40S ribosomal protein S11 - Homo sapiens
(Human)
Length = 158
Score = 169 bits (410), Expect = 4e-41
Identities = 79/115 (68%), Positives = 93/115 (80%), Gaps = 5/115 (4%)
Frame = +1
Query: 31 IRQRKRFRNRPPLFLNRKGGM-----KRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFT 195
I+ + ++ +P +F N+K + K K R++KN+GLGFKTP EAIEGTYIDKKCPFT
Sbjct: 4 IQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFT 63
Query: 196 GNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 360
GNVSIRGRIL+GVV KM M RTIVIRRDYLHY+ KYNRF KRH+NMSVHLSPCFR
Sbjct: 64 GNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFR 118
Score = 54.8 bits (126), Expect = 1e-06
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+IGDIVT+GECRPLSKTVRFNVLKV
Sbjct: 120 VQIGDIVTVGECRPLSKTVRFNVLKV 145
>UniRef50_P26781 Cluster: 40S ribosomal protein S11; n=73;
Eukaryota|Rep: 40S ribosomal protein S11 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 156
Score = 148 bits (359), Expect = 6e-35
Identities = 68/115 (59%), Positives = 85/115 (73%), Gaps = 1/115 (0%)
Frame = +1
Query: 31 IRQRKRFRNRPPLFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSI 210
++ + F+ +P +F N K ++ R +KN GLGFKTP AIEG+YIDKKCPFTG VSI
Sbjct: 7 VQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSI 66
Query: 211 RGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFRAR-GD 372
RG+ILTG V M RTIVIRR YLHY+PKYNR+ KRH+N+ VH+SP FR + GD
Sbjct: 67 RGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGD 121
Score = 51.2 bits (117), Expect = 1e-05
Identities = 20/26 (76%), Positives = 26/26 (100%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V++GDIVT+G+CRP+SKTVRFNV+KV
Sbjct: 117 VQVGDIVTVGQCRPISKTVRFNVVKV 142
>UniRef50_P79013 Cluster: 40S ribosomal protein S11; n=2;
Dikarya|Rep: 40S ribosomal protein S11 -
Schizosaccharomyces pombe (Fission yeast)
Length = 152
Score = 144 bits (349), Expect = 1e-33
Identities = 64/110 (58%), Positives = 82/110 (74%)
Frame = +1
Query: 31 IRQRKRFRNRPPLFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSI 210
++ + F+ +P +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VSI
Sbjct: 7 VQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63
Query: 211 RGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 360
RGRILTG V M RTI+IRR+YLH++PKYNR+ KRH+N++ H+SP FR
Sbjct: 64 RGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113
Score = 48.0 bits (109), Expect = 1e-04
Identities = 19/23 (82%), Positives = 23/23 (100%)
Frame = +2
Query: 374 GDIVTIGECRPLSKTVRFNVLKV 442
GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139
>UniRef50_A0BVQ1 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=18; Eukaryota|Rep:
Chromosome undetermined scaffold_130, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 188
Score = 140 bits (339), Expect = 2e-32
Identities = 65/118 (55%), Positives = 84/118 (71%), Gaps = 4/118 (3%)
Frame = +1
Query: 16 NAKWR-IRQRKRFRNRPPLFLNRKGGMKRKD---MRHHKNVGLGFKTPXEAIEGTYIDKK 183
N W+ + ++ F+ + +F N K + +K +R+ K VGLGFK P +AIEG YIDKK
Sbjct: 27 NILWQTFKNQRAFQKQEGIFQNSKKLLAKKTSKGVRYWKEVGLGFKVPKDAIEGNYIDKK 86
Query: 184 CPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCF 357
CPFTGNVS+RG IL G+V M RTI+IRRDYLHY+ KYNR+ KRHRN+ VH+SP F
Sbjct: 87 CPFTGNVSVRGAILKGIVISTKMTRTIIIRRDYLHYVAKYNRYEKRHRNVPVHISPAF 144
Score = 49.2 bits (112), Expect = 5e-05
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2
Query: 353 ASGHVEIGDIVTIGECRPLSKTVRFNVLKV 442
A G V+ GDIV G+CRPLSKTVRFNVLKV
Sbjct: 143 AFGPVKEGDIVVCGQCRPLSKTVRFNVLKV 172
>UniRef50_Q9U9A0 Cluster: Putative ribosomal protein S11; n=8;
Eukaryota|Rep: Putative ribosomal protein S11 - Physarum
polycephalum (Slime mold)
Length = 158
Score = 127 bits (306), Expect = 2e-28
Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 6/114 (5%)
Frame = +1
Query: 49 FRNRPPLFLNRKG----GMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRG 216
++ + P+F+ +K +K+ D R+ + VGLG+KTP A+EGT++D KCPFTGNVSIRG
Sbjct: 11 YQKQKPIFVGKKRLLGLKLKKSDTRYVRQVGLGYKTPKAALEGTFVDDKCPFTGNVSIRG 70
Query: 217 RILTGVVQKM-XMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFRAR-GD 372
RIL GVV M RT+V+RR+YLHY+ KY R+ KRH N SVH SP + GD
Sbjct: 71 RILRGVVVSAGKMKRTVVVRRNYLHYIQKYKRYEKRHTNFSVHCSPALDVKEGD 124
Score = 49.6 bits (113), Expect = 4e-05
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD VT+GECRPLSKTVRFNVLKV
Sbjct: 120 VKEGDTVTVGECRPLSKTVRFNVLKV 145
>UniRef50_Q4QCN7 Cluster: Ribosomal protein s11 homolog; n=16;
Eukaryota|Rep: Ribosomal protein s11 homolog -
Leishmania major
Length = 141
Score = 124 bits (299), Expect = 1e-27
Identities = 54/94 (57%), Positives = 70/94 (74%)
Frame = +1
Query: 76 NRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMX 255
+RK K +R+ K +GLGFKTP +A+ G YID+KCPFT NV IRGRIL GVV M
Sbjct: 5 SRKHVNKSGHIRYSKKIGLGFKTPAKALNGKYIDRKCPFTSNVVIRGRILRGVVHSTKMH 64
Query: 256 RTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCF 357
RTI+IRR+YLH++ KY R+ KRH++++VH SP F
Sbjct: 65 RTIIIRRNYLHFIKKYQRYQKRHKSLAVHCSPAF 98
Score = 41.9 bits (94), Expect = 0.008
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +2
Query: 374 GDIVTIGECRPLSKTVRFNVLKV 442
GD V IG+CRPLSKT+R+NVL+V
Sbjct: 103 GDEVVIGQCRPLSKTIRYNVLEV 125
>UniRef50_Q15GB4 Cluster: 60S ribosomal protein 11; n=1; Rhodomonas
salina|Rep: 60S ribosomal protein 11 - Rhodomonas salina
(Cryptomonas salina)
Length = 145
Score = 119 bits (287), Expect = 3e-26
Identities = 52/95 (54%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Frame = +1
Query: 91 MKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVI 270
+ +K KN+G+G K P EAI Y DKKCPF G +SIRGRIL G V M R+++I
Sbjct: 16 LTKKKKNSFKNIGMGLKAPLEAINNNYFDKKCPFRGLISIRGRILRGTVISTKMKRSVII 75
Query: 271 RRDYLHYLPKYNRFXKRHRNMSVHLSPCFRAR-GD 372
RRDYLH++ KY RF KRH+N+ H SPCFR + GD
Sbjct: 76 RRDYLHWISKYKRFEKRHKNIPCHCSPCFRVQEGD 110
Score = 48.4 bits (110), Expect = 9e-05
Identities = 19/26 (73%), Positives = 25/26 (96%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD+VTIG+CRPLSKT+RFNVL++
Sbjct: 106 VQEGDLVTIGQCRPLSKTIRFNVLRI 131
>UniRef50_Q7XLC9 Cluster: OSJNBa0070C17.20 protein; n=11;
Eukaryota|Rep: OSJNBa0070C17.20 protein - Oryza sativa
subsp. japonica (Rice)
Length = 185
Score = 113 bits (273), Expect = 2e-24
Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 30/140 (21%)
Frame = +1
Query: 43 KRFRNRPPLFLN-RKGGMKRKD----MRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVS 207
K F +P +FL+ +K G +K R K++GLGFKTP EAIEGTYIDKKCPFTG VS
Sbjct: 7 KAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVS 66
Query: 208 IRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYN------------------------RFX 315
IRGRI+ G M RTI++RR+YLH++ KY R+
Sbjct: 67 IRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISDLGCRYE 126
Query: 316 KRHRNMSVHLSPCFRAR-GD 372
KRH N+ H+SPCFR + GD
Sbjct: 127 KRHSNIPAHVSPCFRVKEGD 146
Score = 45.6 bits (103), Expect = 6e-04
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 142 VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>UniRef50_Q8SS53 Cluster: 40S RIBOSOMAL PROTEIN S11; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S11
- Encephalitozoon cuniculi
Length = 156
Score = 105 bits (252), Expect = 5e-22
Identities = 47/91 (51%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Frame = +1
Query: 133 GFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRF 312
GFK P A YIDKKCPFTG+V++RGR+ GVV+KM +TIV+ +Y+HY KY R+
Sbjct: 38 GFKAPETAYTRQYIDKKCPFTGDVNVRGRLFKGVVKKMKAEKTIVVVANYVHYSKKYKRY 97
Query: 313 XKRHRNMSVHLSPCFRAR---GDW*YCNDRR 396
+RH N SVH+SPCF GD C + R
Sbjct: 98 SRRHTNFSVHMSPCFEGMINVGDTVICGETR 128
>UniRef50_Q42068 Cluster: Ribosomal protein 40S-S11; n=1;
Arabidopsis thaliana|Rep: Ribosomal protein 40S-S11 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 103
Score = 93.5 bits (222), Expect = 2e-18
Identities = 42/73 (57%), Positives = 52/73 (71%)
Frame = +1
Query: 76 NRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMX 255
N +G K R KN+GLGFKTP EAI+G Y+DKKCPFTG VSIRGRIL + + M
Sbjct: 31 NLEGKRPGKVERFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILVWYLPQCEMQ 90
Query: 256 RTIVIRRDYLHYL 294
TI++ RDYLH++
Sbjct: 91 STIIVARDYLHFV 103
>UniRef50_Q3LW88 Cluster: Ribosomal protein S11; n=1; Bigelowiella
natans|Rep: Ribosomal protein S11 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 119
Score = 85.0 bits (201), Expect = 8e-16
Identities = 36/59 (61%), Positives = 46/59 (77%)
Frame = +1
Query: 172 IDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLS 348
IDKKCPF G +++RGRIL G V+K+ M T++IR DYL +L KYNRF KRH+N+ HLS
Sbjct: 23 IDKKCPFYGKINLRGRILRGKVRKIKMKSTVIIRIDYLKFLKKYNRFVKRHKNIPAHLS 81
Score = 46.4 bits (105), Expect = 4e-04
Identities = 19/25 (76%), Positives = 23/25 (92%)
Frame = +2
Query: 368 EIGDIVTIGECRPLSKTVRFNVLKV 442
++GDIV I ECRP+SKTVRFNV+KV
Sbjct: 87 KVGDIVIIAECRPISKTVRFNVIKV 111
>UniRef50_Q8TW21 Cluster: 30S ribosomal protein S17P; n=24;
Archaea|Rep: 30S ribosomal protein S17P - Methanopyrus
kandleri
Length = 118
Score = 70.5 bits (165), Expect = 2e-11
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 103 DMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDY 282
+ R K++GLG K P + D CPF GN+ +RG IL GVV M +T+++ R+Y
Sbjct: 4 EYRMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREY 59
Query: 283 LHYLPKYNRFXKRHRNMSVHLSPCFRAR-GD 372
Y KY R+ +R + H PC A+ GD
Sbjct: 60 YRYDRKYERWERRRSRIPAHNPPCIDAQEGD 90
Score = 32.7 bits (71), Expect = 4.6
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 374 GDIVTIGECRPLSKTVRFNVLKV 442
GD V I ECRPLSKT F V++V
Sbjct: 89 GDKVRIAECRPLSKTKSFVVIEV 111
>UniRef50_A3H7C0 Cluster: Ribosomal protein S17; n=4;
Thermoprotei|Rep: Ribosomal protein S17 - Caldivirga
maquilingensis IC-167
Length = 152
Score = 66.9 bits (156), Expect = 2e-10
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +1
Query: 118 KNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLP 297
+++G+ + P +A+ D KCP+ G+V +RG IL G V + M + +VI+ ++LHY P
Sbjct: 32 RHIGVPWLLPPKAVCN---DDKCPWHGHVKVRGTILEGRVVSVYMGQ-VVIQHEWLHYSP 87
Query: 298 KYNRFXKRHRNMSVHLSPCFRAR-GDW 375
KY R+ ++ RN+ HL C + GD+
Sbjct: 88 KYKRYIRKRRNIHAHLPSCIKVNVGDY 114
Score = 31.9 bits (69), Expect = 8.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVL 436
V +GD V IGE RPL+K + F VL
Sbjct: 109 VNVGDYVVIGETRPLAKFISFVVL 132
>UniRef50_Q9HIR8 Cluster: 30S ribosomal protein S17P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S17P -
Thermoplasma acidophilum
Length = 109
Score = 65.3 bits (152), Expect = 7e-10
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 118 KNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLP 297
+N+GL K P E D CP+ G +S+RG++LTG V M ++ V+ R+Y Y+P
Sbjct: 4 RNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIP 59
Query: 298 KYNRFXKRHRNMSVHLSPCFRAR-GD 372
KY R + + VH+ C + + GD
Sbjct: 60 KYERKATKIKKYHVHVPDCIKIKPGD 85
>UniRef50_Q2QAS1 Cluster: Ribosomal protein S17; n=2; environmental
samples|Rep: Ribosomal protein S17 - uncultured marine
group II euryarchaeote HF70_59C08
Length = 111
Score = 64.1 bits (149), Expect = 2e-09
Identities = 22/60 (36%), Positives = 41/60 (68%)
Frame = +1
Query: 175 DKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPC 354
D+ CPF G++ +RG+I+ G + K+ M ++I++ R+++ Y+ K+ R+ KR R + HL C
Sbjct: 19 DENCPFYGSLRLRGQIIEGTIAKVGMQKSIIVEREHIRYMQKFERYEKRTRRYAAHLPSC 78
Score = 37.1 bits (82), Expect = 0.22
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 359 GHVEIGDIVTIGECRPLSKTVRFNVLK 439
G V +GD V I ECRPLSKT+ F V++
Sbjct: 80 GDVNVGDSVRIMECRPLSKTITFCVIE 106
>UniRef50_Q8PV41 Cluster: 30S ribosomal protein S17P; n=5;
Methanomicrobia|Rep: 30S ribosomal protein S17P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 109
Score = 64.1 bits (149), Expect = 2e-09
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 118 KNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLP 297
+++GL P E + Y CPF G + +RG+IL G V M T+VI R Y+ +
Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYMKMVS 58
Query: 298 KYNRFXKRHRNMSVHLSPCFRAR-GD 372
KY R+ KR + H C A+ GD
Sbjct: 59 KYQRYEKRRSKIHAHNPACISAKVGD 84
Score = 37.1 bits (82), Expect = 0.22
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +2
Query: 368 EIGDIVTIGECRPLSKTVRFNVLK 439
++GDIVTI ECRP+SKT F V+K
Sbjct: 81 KVGDIVTIVECRPISKTKSFVVVK 104
>UniRef50_P12741 Cluster: 30S ribosomal protein S17P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S17P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 112
Score = 63.3 bits (147), Expect = 3e-09
Identities = 30/77 (38%), Positives = 43/77 (55%)
Frame = +1
Query: 124 VGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKY 303
+GL + P E T D+ CPF G +S+RG+ L G V M +T+V+ R+Y +PKY
Sbjct: 3 LGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVPKY 58
Query: 304 NRFXKRHRNMSVHLSPC 354
+RF KR + H C
Sbjct: 59 DRFMKRRSRVPAHAPDC 75
Score = 32.7 bits (71), Expect = 4.6
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2
Query: 371 IGDIVTIGECRPLSKT 418
+GD VTI ECRPLSKT
Sbjct: 80 VGDTVTIAECRPLSKT 95
>UniRef50_Q9YF81 Cluster: 30S ribosomal protein S17P; n=4;
Thermoprotei|Rep: 30S ribosomal protein S17P - Aeropyrum
pernix
Length = 114
Score = 59.3 bits (137), Expect = 5e-08
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +1
Query: 175 DKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPC 354
D CP+ G + +RG +L GVV K R +V++ YL+Y KYNR+ +R + + HL C
Sbjct: 24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYLYYDKKYNRYERRSKKIHAHLPDC 83
Query: 355 FRAR-GD 372
+ GD
Sbjct: 84 ISVKEGD 90
Score = 35.9 bits (79), Expect = 0.50
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD+V IGE P+SKTV+F VL V
Sbjct: 86 VKEGDVVVIGETMPISKTVKFTVLGV 111
>UniRef50_Q8ZWL3 Cluster: 30S ribosomal protein S17P; n=3;
Pyrobaculum|Rep: 30S ribosomal protein S17P -
Pyrobaculum aerophilum
Length = 123
Score = 58.0 bits (134), Expect = 1e-07
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 118 KNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLP 297
KN+G+ P ++ D CP+ G++ +R ++L V+K+ M + V+ ++LHY+
Sbjct: 4 KNIGIPHVLPPASVCD---DPLCPWHGHLKVRLKLLEVTVEKVRMHKAAVVIHEWLHYIR 60
Query: 298 KYNRFXKRHRNMSVHLSPCFRAR-GD 372
KYNR+ +R + M V + C + GD
Sbjct: 61 KYNRYERRRKRMRVRVPECIEVKPGD 86
>UniRef50_A1RXG3 Cluster: Ribosomal protein S17; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein S17 - Thermofilum
pendens (strain Hrk 5)
Length = 111
Score = 49.6 bits (113), Expect = 4e-05
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 175 DKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPC 354
D CP+ G + +RG++L V+K+ M V +YL+Y KY R+ R + V + PC
Sbjct: 21 DPLCPWHGELPVRGQVLRLRVEKVKMHNVAVAVHEYLYYNEKYKRYEVRRKKKHVRVPPC 80
Query: 355 FRAR-GD 372
+ GD
Sbjct: 81 IPVKPGD 87
>UniRef50_Q8TP90 Cluster: Putative 30S ribosomal protein S17P-like;
n=1; Methanosarcina acetivorans|Rep: Putative 30S
ribosomal protein S17P-like - Methanosarcina acetivorans
Length = 486
Score = 49.6 bits (113), Expect = 4e-05
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 118 KNVGL-GFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYL 294
+++G+ G K P E D +CPF G +S+RG+IL G+V M + IV++R +
Sbjct: 2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVMKRYREKWS 57
Query: 295 PKYNRFXKRHRNMSVHLSPCFRAR-GD 372
KY R + + + PC A+ GD
Sbjct: 58 YKYQRKQRVSSKIHAYSPPCMEAKIGD 84
Score = 33.9 bits (74), Expect = 2.0
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +2
Query: 368 EIGDIVTIGECRPLSKTVRFNVLK 439
+IGDI+TI ECRPL+K F V++
Sbjct: 81 KIGDIITIAECRPLNKGSSFVVIE 104
>UniRef50_Q59NQ3 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 162
Score = 48.8 bits (111), Expect = 7e-05
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = -2
Query: 357 EARRQMYGHVPVPFXEPIVFG*VVKVIAADHDSSXHXHLLNDAGEDAAADRNVASEGTLL 178
E+ R + ++ V F ++F V++VI++D+D + H N G+D +D N SE T
Sbjct: 88 ESWRDVGSNILVSFFVSVIFWNVMQVISSDNDGTVHFGGNNSTGQDFTSDGNSTSEWTFF 147
Query: 177 VNVGTLNRLXGSFE 136
VNV T N FE
Sbjct: 148 VNVRTFNGSFWGFE 161
>UniRef50_Q74NJ4 Cluster: 30S ribosomal protein S17P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S17P -
Nanoarchaeum equitans
Length = 113
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +1
Query: 175 DKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPC 354
DKKCP G++ +RG G V K +T+ I ++LPKY R+ R ++ +L C
Sbjct: 16 DKKCPHHGHLKVRGFFFKGKVIKKSDNKTVKIEIIRYYWLPKYERYELRRTRITAYLPEC 75
Query: 355 FR 360
+
Sbjct: 76 LK 77
>UniRef50_A0RVY2 Cluster: Ribosomal protein S17; n=2;
Thermoprotei|Rep: Ribosomal protein S17 - Cenarchaeum
symbiosum
Length = 109
Score = 43.6 bits (98), Expect = 0.002
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +1
Query: 130 LGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNR 309
+G P + E DK PF G + IRG++ G + T+VI ++ Y K+ R
Sbjct: 5 IGLPVPAPSREAADGDKNNPFNGTLPIRGKLFEGTIVSAKARSTVVIEKESPVYFTKFKR 64
Query: 310 FXKRHRNMSVHL 345
+ + + H+
Sbjct: 65 YARGRSRIHAHV 76
>UniRef50_UPI0000D9F1CD Cluster: PREDICTED: similar to ribosomal
protein S11; n=1; Macaca mulatta|Rep: PREDICTED: similar
to ribosomal protein S11 - Macaca mulatta
Length = 84
Score = 43.2 bits (97), Expect = 0.003
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V IG IVT+GEC+PLSKTVRF + KV
Sbjct: 46 VHIGHIVTVGECQPLSKTVRFIMFKV 71
>UniRef50_Q601K5 Cluster: 30S ribosomal protein S17; n=4; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S17 -
Mycoplasma hyopneumoniae (strain 232)
Length = 98
Score = 36.3 bits (80), Expect = 0.38
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 368 EIGDIVTIGECRPLSKTVRFNVLKV 442
E+GD V I ECRP+SKT F +++V
Sbjct: 67 EVGDFVKIAECRPISKTKHFRLVEV 91
>UniRef50_Q5P323 Cluster: 30S ribosomal protein S17; n=130;
Bacteria|Rep: 30S ribosomal protein S17 - Azoarcus sp.
(strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 89
Score = 36.3 bits (80), Expect = 0.38
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +2
Query: 323 TGTCPYICRLASGHVEIGDIVTIGECRPLSKTVRFNVLKV 442
T + Y + G GD+V I ECRP+SKT + V KV
Sbjct: 43 TRSAKYHAHVEDGGAAAGDLVEIEECRPISKTKSWRVAKV 82
>UniRef50_UPI00006CFC97 Cluster: ribosomal protein S17 containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
ribosomal protein S17 containing protein - Tetrahymena
thermophila SB210
Length = 205
Score = 35.1 bits (77), Expect = 0.87
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 214 GRILTG-VVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFRARGD 372
GR L G V+Q M +T+ ++ DY ++ PK F + VH S F GD
Sbjct: 24 GRELFGTVIQHGKMDKTVTVKVDYRYWYPKTKEFKSKTSKYQVHDSENFCVTGD 77
>UniRef50_A4M9T1 Cluster: 30S ribosomal protein S17; n=2;
Bacteria|Rep: 30S ribosomal protein S17 - Petrotoga
mobilis SJ95
Length = 110
Score = 34.3 bits (75), Expect = 1.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 217 RILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVH 342
+I+TG V M +TI + D L PKY++F ++ R H
Sbjct: 4 KIITGKVVSNAMDKTITVETDRLTKHPKYHKFVRKTRRYHAH 45
>UniRef50_Q7M8E2 Cluster: 30S ribosomal protein S17; n=11;
Epsilonproteobacteria|Rep: 30S ribosomal protein S17 -
Wolinella succinogenes
Length = 88
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 338 YICRLASGHVEIGDIVTIGECRPLSKTVRFNVLKV 442
YI S V++GD++ ECRPLSK F++ KV
Sbjct: 47 YIVHDESNAVKVGDMIEAIECRPLSKRKSFSLHKV 81
>UniRef50_Q9UUB0 Cluster: Mitochondrial ribosomal protein subunit
S17; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S17 - Schizosaccharomyces
pombe (Fission yeast)
Length = 90
Score = 33.5 bits (73), Expect = 2.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 371 IGDIVTIGECRPLSKTVRFNVLKV 442
+GD VTI CRP S T RF ++K+
Sbjct: 51 VGDAVTIQPCRPRSATKRFEIIKI 74
>UniRef50_P38519 Cluster: 30S ribosomal protein S17; n=7;
Bacteria|Rep: 30S ribosomal protein S17 - Thermotoga
maritima
Length = 107
Score = 33.5 bits (73), Expect = 2.7
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +2
Query: 368 EIGDIVTIGECRPLSKTVRFNVLKV 442
+IGD+V I E RPLSKT R+ V+++
Sbjct: 52 KIGDVVEIEETRPLSKTKRWRVVRI 76
>UniRef50_UPI00001F8C9C Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 147
Score = 33.1 bits (72), Expect = 3.5
Identities = 21/68 (30%), Positives = 28/68 (41%)
Frame = +1
Query: 28 RIRQRKRFRNRPPLFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVS 207
R R +R N R G +R+D + H N G E + GT+ K TG S
Sbjct: 22 RHRDAQRHGNARHRDAQRHGIARRRDAQQHGNTSHGHTAAREHVTGTHNSKGSHVTGTHS 81
Query: 208 IRGRILTG 231
G +TG
Sbjct: 82 STGTHVTG 89
>UniRef50_O66439 Cluster: 30S ribosomal protein S17; n=1; Aquifex
aeolicus|Rep: 30S ribosomal protein S17 - Aquifex
aeolicus
Length = 107
Score = 33.1 bits (72), Expect = 3.5
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2
Query: 371 IGDIVTIGECRPLSKTVRFNVLKV 442
+GDIV I E RPLSKT R+ V+K+
Sbjct: 64 VGDIVMIRETRPLSKTKRWVVVKI 87
>UniRef50_Q01WA1 Cluster: 30S ribosomal protein S17; n=3;
Bacteria|Rep: 30S ribosomal protein S17 - Solibacter
usitatus (strain Ellin6076)
Length = 102
Score = 32.3 bits (70), Expect = 6.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 359 GHVEIGDIVTIGECRPLSKTVRFNVLKV 442
G +GD+V I ECRPLSK R+ + +
Sbjct: 57 GRANLGDVVRIIECRPLSKLKRWRLADI 84
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,668,271
Number of Sequences: 1657284
Number of extensions: 8938805
Number of successful extensions: 21634
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 21023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21627
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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