Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C01
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   144   9e-36
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   144   9e-36
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    33   0.018
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   6.3  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   6.3  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.3  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  144 bits (348), Expect = 9e-36
 Identities = 64/110 (58%), Positives = 82/110 (74%)
 Frame = +1

Query: 31  IRQRKRFRNRPPLFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSI 210
           ++  + F+ +P +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSI
Sbjct: 7   VQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63

Query: 211 RGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 360
           RGRILTG V    M RTI+IRR+YLH++PKYNR+ KRH+N++ H+SP FR
Sbjct: 64  RGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 374 GDIVTIGECRPLSKTVRFNVLKV 442
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  144 bits (348), Expect = 9e-36
 Identities = 64/110 (58%), Positives = 82/110 (74%)
 Frame = +1

Query: 31  IRQRKRFRNRPPLFLNRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSI 210
           ++  + F+ +P +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VSI
Sbjct: 7   VQSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSI 63

Query: 211 RGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFR 360
           RGRILTG V    M RTI+IRR+YLH++PKYNR+ KRH+N++ H+SP FR
Sbjct: 64  RGRILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR 113



 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 19/23 (82%), Positives = 23/23 (100%)
 Frame = +2

Query: 374 GDIVTIGECRPLSKTVRFNVLKV 442
           GD+VT+G+CRPLSKTVRFNVL+V
Sbjct: 117 GDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 371 IGDIVTIGECRPLSKTVRFNVLKV 442
           +GD VTI  CRP S T RF ++K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 166 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 68
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 365 VEIGDIVTIGECRPLSKTVRFNVL 436
           V +GDIVTI  C  +    R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 252 HXHLLNDAGEDAAADRNVASEGTLLVNVGT 163
           + H+L D  + +  DRN  +EGT   N  T
Sbjct: 136 YKHILPDLPQSSEVDRNSETEGTREENSNT 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,824
Number of Sequences: 5004
Number of extensions: 36884
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)