Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_C01
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 134 5e-32
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 126 1e-29
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 126 1e-29
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 126 1e-29
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 113 6e-26
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 109 1e-24
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 2.1
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 2.7
08_02_0383 - 16539472-16539633,16543044-16543205 28 3.6
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 27 8.3
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 134 bits (323), Expect = 5e-32
Identities = 58/89 (65%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Frame = +1
Query: 109 RHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLH 288
R KN+GLGFKTP EAIEGTYIDKKCPFTG VSIRGRI+ G M RTI++RR+YLH
Sbjct: 25 RFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLH 84
Query: 289 YLPKYNRFXKRHRNMSVHLSPCFRAR-GD 372
++ KY R+ KRH N+ H+SPCFR + GD
Sbjct: 85 FVKKYQRYEKRHSNIPAHISPCFRVKEGD 113
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/26 (76%), Positives = 23/26 (88%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD V IG+CRPLSKTVRFNV+KV
Sbjct: 109 VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 126 bits (304), Expect = 1e-29
Identities = 65/123 (52%), Positives = 79/123 (64%), Gaps = 13/123 (10%)
Frame = +1
Query: 43 KRFRNRPPLFLNRKGGMKRKDM-----RHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVS 207
+ F +P +FL K K K R KN+GLGFKTP EAIEGTYIDKKCPFTG VS
Sbjct: 7 RAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVS 66
Query: 208 IRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNR-------FXKRHRNMSVHLSPCFRAR 366
IRGRI+ G M RTI++RR+YLH++ KY R + KRH N+ H+SPCFR +
Sbjct: 67 IRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHISPCFRVK 126
Query: 367 -GD 372
GD
Sbjct: 127 EGD 129
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 125 VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 126 bits (303), Expect = 1e-29
Identities = 65/125 (52%), Positives = 82/125 (65%), Gaps = 15/125 (12%)
Frame = +1
Query: 43 KRFRNRPPLFLN-RKGGMKRKD----MRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVS 207
K F +P +FL+ +K G +K R K++GLGFKTP EAIEGTYIDKKCPFTG VS
Sbjct: 7 KAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVS 66
Query: 208 IRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYN---------RFXKRHRNMSVHLSPCFR 360
IRGRI+ G M RTI++RR+YLH++ KY R+ KRH N+ H+SPCFR
Sbjct: 67 IRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR 126
Query: 361 AR-GD 372
+ GD
Sbjct: 127 VKEGD 131
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 127 VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 126 bits (303), Expect = 1e-29
Identities = 65/125 (52%), Positives = 82/125 (65%), Gaps = 15/125 (12%)
Frame = +1
Query: 43 KRFRNRPPLFLN-RKGGMKRKD----MRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVS 207
K F +P +FL+ +K G +K R K++GLGFKTP EAIEGTYIDKKCPFTG VS
Sbjct: 7 KAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVS 66
Query: 208 IRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYN---------RFXKRHRNMSVHLSPCFR 360
IRGRI+ G M RTI++RR+YLH++ KY R+ KRH N+ H+SPCFR
Sbjct: 67 IRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAHVSPCFR 126
Query: 361 AR-GD 372
+ GD
Sbjct: 127 VKEGD 131
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 127 VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 113 bits (273), Expect = 6e-26
Identities = 65/140 (46%), Positives = 82/140 (58%), Gaps = 30/140 (21%)
Frame = +1
Query: 43 KRFRNRPPLFLN-RKGGMKRKD----MRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVS 207
K F +P +FL+ +K G +K R K++GLGFKTP EAIEGTYIDKKCPFTG VS
Sbjct: 7 KAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVS 66
Query: 208 IRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYN------------------------RFX 315
IRGRI+ G M RTI++RR+YLH++ KY R+
Sbjct: 67 IRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISDLGCRYE 126
Query: 316 KRHRNMSVHLSPCFRAR-GD 372
KRH N+ H+SPCFR + GD
Sbjct: 127 KRHSNIPAHVSPCFRVKEGD 146
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/26 (80%), Positives = 23/26 (88%)
Frame = +2
Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
V+ GD V IG+CRPLSKTVRFNVLKV
Sbjct: 142 VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 109 bits (262), Expect = 1e-24
Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 5/94 (5%)
Frame = +1
Query: 43 KRFRNRPPLFLN-RKGGMKRKD----MRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVS 207
K F +P +FL+ +K G +K R K++GLGFKTP EAIEGTYIDKKCPFTG VS
Sbjct: 7 KAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVS 66
Query: 208 IRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNR 309
IRGRI+ G M RTI++RR+YLH++ KY R
Sbjct: 67 IRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 34 RQRKRFRNRPPLFLNRKGGMKRKDMRHHKN 123
R R R R+R PL +GG +R RH ++
Sbjct: 474 RDRSRSRSRSPLRYRERGGYRRPSPRHSRS 503
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 157 IEGTYIDKKCPFTGNVSIRGRILTGVVQKMXMXRT-IVIRRDYLHYLPKY 303
+ GT PFTG++S G + + KM +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 223 LTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVH 342
+ G+V M +++V+ D L + YNR+ KR H
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAH 43
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 76 NRKGGMKRKDMRHHKNVGLGFKTPXEAIEGTYIDKKCPFTGNVSIRGR 219
N G ++RH ++G E T +DK+ P +G S+ GR
Sbjct: 117 NLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,156,286
Number of Sequences: 37544
Number of extensions: 261378
Number of successful extensions: 597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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