Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C01
         (496 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             151   4e-37
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.056
SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)                   33   0.17 
SB_35784| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   29   2.1  
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 29   2.8  
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_22716| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)                28   3.7  
SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  151 bits (365), Expect = 4e-37
 Identities = 76/128 (59%), Positives = 92/128 (71%), Gaps = 18/128 (14%)
 Frame = +1

Query: 43  KRFRNRPPLFLNRKGGM----KRKDMRHHKNVGLGFKTPX------------EAIEGTYI 174
           + ++ + P+F NRK  +    K+KD+R  +NVGLGFKTP             EAIEGTYI
Sbjct: 7   RAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYI 66

Query: 175 DKKCPFTGNVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPC 354
           DKKCPFTGNVSIRGRILTG+ + M M RTI+IRRDYLHY+ KYNRF KRH+N++ H SPC
Sbjct: 67  DKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPC 126

Query: 355 FR--ARGD 372
           FR  A GD
Sbjct: 127 FRDIALGD 134



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 19/26 (73%), Positives = 25/26 (96%)
 Frame = +2

Query: 365 VEIGDIVTIGECRPLSKTVRFNVLKV 442
           + +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 130 IALGDLITVGQCRPLSKTVRFNVLKV 155



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 24 MADQTEKAFQKQATAFPEQER 86
          MA+QTE+A+QKQA  F  ++R
Sbjct: 1  MAEQTERAYQKQAPIFQNRKR 21


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 374 GDIVTIGECRPLSKTVRFNVLKV 442
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)
          Length = 348

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = -2

Query: 423 LTVLDKGLHSPIVTISPISTCPEARRQMYGHVPVPFXEPIVFG*VVKVIAA--DH-DSSX 253
           LT+L++ L   ++ + P   CP+ +R      P P  E   F  V  V+AA  +H D+S 
Sbjct: 195 LTILEERLQL-VLPLHPAKQCPKTQRSALKGDPTPPNEAAPFSRVHTVMAAAPEHTDASE 253

Query: 252 HXHLLNDAGEDAAADRNV 199
           H  LL +  + A   +++
Sbjct: 254 HGALLQEISQAALDGQSI 271


>SB_35784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = -2

Query: 288 VKVIAADHDSSXHXHLL--NDAGEDAAADRNVASEGTLLVNVGTLNRLXGSFEA*TNILM 115
           V+ + ADH SS   H L  +D    + + ++V+      V +  L  +    +A      
Sbjct: 61  VQSLKADHASSRQSHSLPPSDVASSSRSSKDVSPRRATTVTLPELRAMDDLADAADR--R 118

Query: 114 VTHVLPLHATFPVQEKRWPVSETLSLSD 31
           V HVLP     P Q++ +    TL   D
Sbjct: 119 VAHVLPSQLLSPPQKQSYSSGPTLFCRD 146


>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +1

Query: 199 NVSIRGRILTGVVQKMXMXRTIVIRRDYLHYLPKYNRFXKRHRNMSVHLSPCFRARGDW* 378
           N++IR   +   + +  +   +  R DY+  +  ++   K HR++S  +     A  DW 
Sbjct: 148 NIAIRAVGIGKEIDERALQTLVSNRNDYIFRVGSFDALSKLHRSLSQSICGTVGA-PDWL 206

Query: 379 YC 384
           YC
Sbjct: 207 YC 208


>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 174 NVGTLNRLXGSFEA*TNILM---VTHVLPLHATFPVQEKRWPV 55
           +V  LN L    EA  N LM   ++HV PL  T+ V + RW V
Sbjct: 743 SVNLLNTLPKGDEASINFLMTQALSHVAPLPFTYLVDQWRWKV 785


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 164 PSIASXGVLKPKPTFLW*RM-SFLFMPPFLFRKSGGLFLK 48
           P++   GV  P+PT  W R  S  F   F  R SG L+++
Sbjct: 654 PTLQCKGVGDPRPTITWYRKGSKTFPKHFKVRPSGSLYIR 693


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 175 QCRYPQSPLWEF*SLNQHSYGDACP 101
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_22716| Best HMM Match : zf-CCHC (HMM E-Value=0.0097)
          Length = 396

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 31  IRQRKRFRNRPPLFLNRKGGMKRKDMRHHKNVGLGFKTP 147
           IR+ KR+ +RPP   NR  G +R++ R   +  +    P
Sbjct: 8   IRRNKRYYHRPPAQKNRVKGGRRQEPRKPPHTDISKSNP 46


>SB_10489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -2

Query: 456 PLPFETFKTLNLTVLDKGLHSPIVTISPISTCPEARRQMYGHVPVPFXEP 307
           P+P  ++ T   T+L   LH P   ++P  T       +Y H P P   P
Sbjct: 94  PIPTPSY-TYTYTLLHLYLHPPTPIVTPSYTYTYTLLHLYLHPPTPIPTP 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,016
Number of Sequences: 59808
Number of extensions: 291855
Number of successful extensions: 678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)