Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_C01
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.8  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   3.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.2  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 100 SSSCHLSCSGKAVACF 53
           SSS   +CSG  V CF
Sbjct: 285 SSSASTTCSGHTVRCF 300


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 301 YNRFXKRHRNMSVHLSPCFRARGDW*YCNDRRMQTFVQNS 420
           YNR+  R R + +  + C   R    +  +RRM+   +N+
Sbjct: 29  YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENA 68


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 301 YNRFXKRHRNMSVHLSPCFRARGDW*YCNDRRMQTFVQN 417
           YNR+  R R + +  + C   R    +  +RRM+   +N
Sbjct: 291 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEN 329


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 41  ESVSETGHRFS*TGKVA*RGR 103
           + + E  HR   TG+V  RGR
Sbjct: 530 KGIDEYVHRIGRTGRVGNRGR 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,601
Number of Sequences: 438
Number of extensions: 2421
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)