Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B21
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 152 5e-38
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 102 4e-23
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 85 6e-18
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 55 1e-08
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 0.45
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 29 0.59
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 26 4.2
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 25 7.3
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 7.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 7.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 9.6
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 152 bits (368), Expect = 5e-38
Identities = 69/114 (60%), Positives = 86/114 (75%)
Frame = +2
Query: 314 PNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG 493
P+V+ + T ++ LKKLVYLYL+NYAK+ PD+ I+AVNTFVKD E+ NP +RALA+RTMG
Sbjct: 56 PDVLKNLATRDITLKKLVYLYLINYAKTHPDLCILAVNTFVKDSEEYNPTLRALAIRTMG 115
Query: 494 CIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVEDQGFLXQL 655
CIRV+KI YL +PL K LKDE PYVRK A VCV K+YD+ GF+ QL
Sbjct: 116 CIRVNKIIGYLADPLRKALKDEHPYVRKAAAVCVVKMYDLDREYCASNGFIEQL 169
Score = 38.7 bits (86), Expect = 7e-04
Identities = 27/81 (33%), Positives = 36/81 (44%)
Frame = +1
Query: 151 ISTMTDSKYFTTTXKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPECREL 330
+ + S F K E EL+ L S IA+MTVGKDVS+LFP+ +
Sbjct: 2 VPKLFQSSRFKAFKKSETSELQKGLVSQYAYERIDAVKRTIAAMTVGKDVSSLFPDVLKN 61
Query: 331 HADR*LRTEKTGVLILNELCK 393
A R + +K L L K
Sbjct: 62 LATRDITLKKLVYLYLINYAK 82
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 102 bits (245), Expect = 4e-23
Identities = 49/114 (42%), Positives = 69/114 (60%)
Frame = +2
Query: 314 PNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG 493
P+V++ M+++NLELKKL YLYL YA +P A AV + D SNP+IR+LA+RT+
Sbjct: 53 PSVISSMESNNLELKKLCYLYLKIYASVKPTEAKRAVKLILNDIYSSNPMIRSLALRTLT 112
Query: 494 CIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVEDQGFLXQL 655
+ + +P+ + L D PYVRKTA + +AKLY MVE G + L
Sbjct: 113 SVNIKNFWVAAMDPIVRLLDDTDPYVRKTAAIGIAKLYSYDKKMVESSGLIDHL 166
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 85.4 bits (202), Expect = 6e-18
Identities = 38/103 (36%), Positives = 64/103 (62%)
Frame = +2
Query: 314 PNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG 493
P+VV + ++N E+++LV++YL+ YA+ PD+A+++VNT K D NPL R+ A+R M
Sbjct: 72 PDVVKLVASENPEIRRLVHIYLLQYAEFNPDLALLSVNTVQKTLYDKNPLTRSTAIRVMS 131
Query: 494 CIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSS 622
IRV I + + +C+ D VR++A + + K Y + S
Sbjct: 132 SIRVPAINGIVLLAIQQCITDTADRVRQSAALAITKCYSLDPS 174
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 54.8 bits (126), Expect = 1e-08
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Frame = +2
Query: 332 MQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNTFVKDCEDSNPLIRALAVRTMGC 496
M + N ELKKL+Y Y K D I+A N+F D + N IR +R +
Sbjct: 61 MPSRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLCK 120
Query: 497 IRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVEDQGFLXQ 652
++ ++ + L + +CL+ YVRK A + V +Y +S+ ++ D L +
Sbjct: 121 LKEPELLDPLIPTVRQCLEHRHAYVRKNAILAVFSIYQVSNHLIPDAASLAE 172
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.45
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 95 FLIDKKERSNKLXNKHLKLYQR*LIPSTSPLR 190
FL KE S +L K ++++ IPSTSP++
Sbjct: 12 FLFPNKEDSKQLVEKAIEVFSNIKIPSTSPIQ 43
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 335 QTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCE 448
+ DN ++LVY +M Y +Q ++I+ +TF + E
Sbjct: 68 KNDNAAFRELVYNLMMRYVSTQKHLSIIERHTFFQTIE 105
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 506 DKITEYLCEPLTKCLKDEXPYVR 574
+K TEYL + LKDE P VR
Sbjct: 357 EKTTEYLLPMFLELLKDENPEVR 379
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -3
Query: 631 FNHA*RDII*LCDAHGCSLPDIRXFIFQALC*WFA*IFCNLVHSNASHSPYSQSSN 464
F HA ++ C+ H SLP++ + W +FC + ++ S QS+N
Sbjct: 465 FKHAIYKLLGNCEPHRVSLPEVCVTSEDYM--WIQLMFCRVNQNDVIDSNGGQSTN 518
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 296 TSQHCSPNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI 415
TS +P +VN +QTD E+ ++L N + D A+
Sbjct: 59 TSSELTPGIVNVIQTD-FEVDTCMHLTCTNMSTEMIDAAL 97
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 387 MQSHSQTWLSWRSILLSRTVRIQIH*FELWLYGLWDA 497
M SHS T + ++ +R+ I ELW GL +A
Sbjct: 1797 MLSHSDTLVRQALLVSQELIRVAILWHELWYEGLEEA 1833
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 398 VTLHNSLSISTPVFSVLSYLSACNSRHSGNNAETSFPTVMDAI 270
V+ +NS +I P FS S L CN +S P+V+D +
Sbjct: 1286 VSFNNSTAI--PFFSTKSVLWYCNRLFQELEGFSSIPSVIDLV 1326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,432
Number of Sequences: 5004
Number of extensions: 43043
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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