Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B21
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 202 3e-52
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 95 4e-20
01_05_0762 + 24990915-24990970,24991076-24991592,24991676-249917... 95 6e-20
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 36 0.021
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 36 0.028
09_06_0269 - 21947847-21947904,21947988-21948169,21948268-219489... 28 7.5
07_01_0049 + 382526-383031,383385-384000 28 7.5
10_08_0974 + 21969713-21971914 27 9.9
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 202 bits (492), Expect = 3e-52
Identities = 91/113 (80%), Positives = 105/113 (92%)
Frame = +2
Query: 317 NVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGC 496
+VVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVNTFVKD +D NPLIRALAVRTMGC
Sbjct: 143 DVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGC 202
Query: 497 IRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVEDQGFLXQL 655
IRVDKITEYLC+PL +CLKD+ PYVRKTA +CVAKLYDI++ +VED+GFL L
Sbjct: 203 IRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLEAL 255
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/22 (81%), Positives = 19/22 (86%)
Frame = +1
Query: 166 DSKYFTTTXKGEIFELKSELNS 231
DSKYF+TT KGEI ELK ELNS
Sbjct: 5 DSKYFSTTKKGEIPELKEELNS 26
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 271 IASMTVGKDVSALFPE 318
IA+MTVGKDVS+LF +
Sbjct: 128 IAAMTVGKDVSSLFTD 143
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 95.1 bits (226), Expect = 4e-20
Identities = 44/103 (42%), Positives = 67/103 (65%)
Frame = +2
Query: 305 HCSPNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVR 484
H P VV + + +LE+KKLVYLYL++YA+ + + A++++N F KD D NPL+RA A+R
Sbjct: 64 HFFPQVVKNVASQSLEVKKLVYLYLLHYAEKRQNEALLSINIFQKDLSDINPLVRAWALR 123
Query: 485 TMGCIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDI 613
TM IR+ + + + KC +D YVRK A + KL+D+
Sbjct: 124 TMAGIRLHVVAPLVLVAVKKCARDPSAYVRKCAAYALCKLHDL 166
>01_05_0762 +
24990915-24990970,24991076-24991592,24991676-24991753,
24993678-24993743,24994819-24994943,24995414-24995612,
24995909-24996137,24996259-24996425,24996526-24996735,
24997245-24997355,24997436-24997612,24997826-24998284,
24998676-24998966
Length = 894
Score = 94.7 bits (225), Expect = 6e-20
Identities = 45/105 (42%), Positives = 66/105 (62%)
Frame = +2
Query: 320 VVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI 499
+V C T ++ LKK+ YLY+ +A++ PD+A++ +N +DC D +P IR LA+R++ +
Sbjct: 69 MVLCSATSDVVLKKMCYLYVGVHARNHPDLALLTINFLQRDCHDQDPTIRGLALRSLCSL 128
Query: 500 RVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVED 634
RV + EYL PL LKD YVR A V AKLY IS++ D
Sbjct: 129 RVPNLVEYLVSPLATGLKDPSAYVRMIAAVGAAKLYHISATACLD 173
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 36.3 bits (80), Expect = 0.021
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 356 KKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEP 535
K++ Y+ D M +NT D N + LA+ +G I + +E L
Sbjct: 87 KQVGYIVTSCLLNENNDFLRMVINTVRNDIIGRNETYQCLALTMVGNIGGKEFSESLAPD 146
Query: 536 LTKCLKDEX--PYVRKTAXVCVAKLYDISSSMVEDQGF 643
+ K L P VRK A +C+ +LY + +V G+
Sbjct: 147 VQKLLISSSCRPVVRKKAALCLLRLYRKNPDVVNIDGW 184
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 35.9 bits (79), Expect = 0.028
Identities = 25/104 (24%), Positives = 46/104 (44%)
Frame = +2
Query: 320 VVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI 499
V Q+ + L++LVYL + + S D I+ ++ +KD + RA A+R + I
Sbjct: 74 VTKLFQSKDAGLRRLVYLMIKELSPSS-DEVIIVTSSLMKDMNSKTDMYRANAIRVLCRI 132
Query: 500 RVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVE 631
+ + L + + D+ P V A V L + +V+
Sbjct: 133 IDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQANPEIVK 176
>09_06_0269 -
21947847-21947904,21947988-21948169,21948268-21948963,
21949378-21950021,21950441-21950543,21950618-21950812,
21951308-21951931
Length = 833
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +2
Query: 401 PDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRV--------DKITEYLCEPLTKCLKD 556
P M M V + VK +D++ ++R V T G + + L PL + L +
Sbjct: 91 PHMTKM-VTSIVKRLKDADSVVRDACVDTCGTLALCARGYGDGGAALVALVRPLFESLGE 149
Query: 557 EXPYVRKTAXVCVAKLYDISS 619
+ YV+ A C+AK+ D S+
Sbjct: 150 QNRYVQAGAASCLAKVIDESN 170
>07_01_0049 + 382526-383031,383385-384000
Length = 373
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 416 MAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCV 595
M V+ + D +DS P+ RA T+ C+R + LT + PY K + + +
Sbjct: 69 MVVDDLLTDVDDSKPVGRAQGSYTLACLRAPVFVVSITLVLT-----DGPY--KGSTILI 121
Query: 596 AKLYDISSSMVE 631
A DIS + E
Sbjct: 122 AGRDDISEEVRE 133
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 644 RSPDLQPCLKRYHITLRRTRXQ 579
R PD QPC + +H T T Q
Sbjct: 511 REPDPQPCFRMFHATQAHTNAQ 532
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585,520
Number of Sequences: 37544
Number of extensions: 252637
Number of successful extensions: 574
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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