Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B21
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   89   2e-18
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)             34   0.089
SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)                   31   0.62 
SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)                29   2.5  
SB_29659| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 41/42 (97%), Positives = 42/42 (100%)
 Frame = +2

Query: 314 PNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVK 439
           P+VVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVK
Sbjct: 52  PDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVK 93



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 37/53 (69%), Positives = 40/53 (75%)
 Frame = +1

Query: 160 MTDSKYFTTTXKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPE 318
           MTDSKYFTTT KGEIFELK+ELNSD            IASMTVGKDVS+LFP+
Sbjct: 1   MTDSKYFTTTKKGEIFELKAELNSDKKDRKKEAVKKVIASMTVGKDVSSLFPD 53


>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
          Length = 723

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +2

Query: 413 IMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVC 592
           I+  + + KD +  N  IR   +R +  ++  ++ E L   +  CL+    YVR+ A + 
Sbjct: 290 ILVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPLMPAIRTCLEHRHSYVRRNAVMA 349

Query: 593 VAKLY 607
           +  +Y
Sbjct: 350 IYTIY 354


>SB_47281| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 949

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
 Frame = +2

Query: 368 YLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLTKC 547
           YL++     +  ++  + V +   D    N +   LA++ +  I   ++ + L   + K 
Sbjct: 108 YLFISVLVSANSELIKLIVQSIKNDLSSRNAIFVCLALQCIANIGNQEMVDQLGSEVPKL 167

Query: 548 L--KDEXPYVRKTAXVCVAKLYDISSSMV 628
           L   D    V++ A +CV KL+ ++ +++
Sbjct: 168 LVSPDTSDSVKQCAALCVLKLFRLNENLL 196


>SB_37963| Best HMM Match : Aldedh (HMM E-Value=1.8e-16)
          Length = 266

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 365 VYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIRVDKITEY 523
           VY  + +  K   D+A+ A N   K    S+P  RA  +R +  +  D++ E+
Sbjct: 36  VYCKVPDSGKEHVDLAVAAANAAFKSWSVSSPAYRAERLRKLADLIEDRLEEF 88


>SB_29659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 618 EEISYNFATHTXAVFRT*GXSSFRHFVNGSHRYSVILSTRMHPIVRTAKARINGFESS 445
           E +++N+ T   A  RT   ++ RH  + +H Y     TR H   RT ++ I    ++
Sbjct: 77  EHVTHNYVTREHATSRTRNLTNTRHHEHVTHNY----GTREHTTSRTRESGIGNLTNT 130


>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 503 VDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLY 607
           +D +++ L E + + ++D+   VR  A +C+ KLY
Sbjct: 398 IDCVSDKLFEDICERMRDKKSNVRMEAMICIGKLY 432


>SB_11733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 467 RALAVRTMGCIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVA 598
           R LAVRT+  + V  +      PL + +    PY+R    VCVA
Sbjct: 103 RFLAVRTVRSLCV-ALASLQYVPLDRSVSHSLPYIRTVRSVCVA 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,546,725
Number of Sequences: 59808
Number of extensions: 312319
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)