Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B21
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans AP...   205   2e-53
AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans AP...   205   2e-53
AC024202-2|AAP86608.1|  226|Caenorhabditis elegans C. elegans AP...    88   6e-18
Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical p...    82   3e-16
Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical pr...    82   3e-16
AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...    42   5e-04
U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    40   0.002
Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical...    27   8.9  

>AC024202-5|AAP86609.1|  827|Caenorhabditis elegans C. elegans APB-1
           protein, isoform c protein.
          Length = 827

 Score =  205 bits (501), Expect = 2e-53
 Identities = 92/114 (80%), Positives = 107/114 (93%)
 Frame = +2

Query: 314 PNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG 493
           P+VVNCMQTDN+ELKKLVYLYLMNYAKSQPD+AIMAVNTFVKDCED NPLIRALAVRTMG
Sbjct: 52  PDVVNCMQTDNVELKKLVYLYLMNYAKSQPDLAIMAVNTFVKDCEDPNPLIRALAVRTMG 111

Query: 494 CIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVEDQGFLXQL 655
           CIRV+KITEYLC+PL +C+KDE PYVRKTA VCVAKL+D++ ++V++QGF+  L
Sbjct: 112 CIRVEKITEYLCDPLRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELL 165



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 38/53 (71%), Positives = 40/53 (75%)
 Frame = +1

Query: 160 MTDSKYFTTTXKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPE 318
           MTDSKYFTTT KGEIFELK+ELNSD            IASMTVGKDVSALFP+
Sbjct: 1   MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPD 53


>AC024202-3|AAF36038.2|  955|Caenorhabditis elegans C. elegans APB-1
           protein, isoform a protein.
          Length = 955

 Score =  205 bits (501), Expect = 2e-53
 Identities = 92/114 (80%), Positives = 107/114 (93%)
 Frame = +2

Query: 314 PNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMG 493
           P+VVNCMQTDN+ELKKLVYLYLMNYAKSQPD+AIMAVNTFVKDCED NPLIRALAVRTMG
Sbjct: 52  PDVVNCMQTDNVELKKLVYLYLMNYAKSQPDLAIMAVNTFVKDCEDPNPLIRALAVRTMG 111

Query: 494 CIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVEDQGFLXQL 655
           CIRV+KITEYLC+PL +C+KDE PYVRKTA VCVAKL+D++ ++V++QGF+  L
Sbjct: 112 CIRVEKITEYLCDPLRRCMKDEDPYVRKTAAVCVAKLHDMNPALVKEQGFVELL 165



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 38/53 (71%), Positives = 40/53 (75%)
 Frame = +1

Query: 160 MTDSKYFTTTXKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPE 318
           MTDSKYFTTT KGEIFELK+ELNSD            IASMTVGKDVSALFP+
Sbjct: 1   MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPD 53


>AC024202-2|AAP86608.1|  226|Caenorhabditis elegans C. elegans APB-1
           protein, isoform b protein.
          Length = 226

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 45/67 (67%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
 Frame = +2

Query: 314 PNVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDC--EDSNPLIRALAVRT 487
           P+VVNCMQTDN+ELKKLVYLYLMNYAKSQPD+AIMAVNTFVK     D N    A  V  
Sbjct: 52  PDVVNCMQTDNVELKKLVYLYLMNYAKSQPDLAIMAVNTFVKVAIKNDINAFYFATTVPL 111

Query: 488 MGCIRVD 508
           +   R D
Sbjct: 112 LAYFRED 118



 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 38/53 (71%), Positives = 40/53 (75%)
 Frame = +1

Query: 160 MTDSKYFTTTXKGEIFELKSELNSDXXXXXXXXXXXXIASMTVGKDVSALFPE 318
           MTDSKYFTTT KGEIFELK+ELNSD            IASMTVGKDVSALFP+
Sbjct: 1   MTDSKYFTTTKKGEIFELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPD 53


>Z83122-10|CAB05601.1|  896|Caenorhabditis elegans Hypothetical
           protein R11A5.1b protein.
          Length = 896

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 38/102 (37%), Positives = 62/102 (60%)
 Frame = +2

Query: 320 VVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI 499
           VV  +   N+ELKKLV++YL+ YA+ Q D+A+++++TF +  +D N LIR  A+R +  I
Sbjct: 55  VVKNVAAKNVELKKLVFVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRGSALRVLTSI 114

Query: 500 RVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSM 625
           RV  +   +   +   ++D  PYVRK A   + KLY +   +
Sbjct: 115 RVPMVAPIMLLAIKDAVRDMSPYVRKVAAHAIPKLYSLEPEL 156


>Z83122-9|CAB05598.1|  906|Caenorhabditis elegans Hypothetical
           protein R11A5.1a protein.
          Length = 906

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 38/102 (37%), Positives = 62/102 (60%)
 Frame = +2

Query: 320 VVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCI 499
           VV  +   N+ELKKLV++YL+ YA+ Q D+A+++++TF +  +D N LIR  A+R +  I
Sbjct: 55  VVKNVAAKNVELKKLVFVYLVRYAEEQQDLALLSISTFQRALKDPNQLIRGSALRVLTSI 114

Query: 500 RVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSM 625
           RV  +   +   +   ++D  PYVRK A   + KLY +   +
Sbjct: 115 RVPMVAPIMLLAIKDAVRDMSPYVRKVAAHAIPKLYSLEPEL 156


>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
           protein Y25C1A.5 protein.
          Length = 971

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
 Frame = +2

Query: 290 EKTSQHCSPNVVN-CMQTDNLELKKLVYLYLMNYAKSQPD-----MAIMAVNTFVKDCED 451
           EKTSQ     V+  C+ ++   LKK++ ++     K+  +       I+  + + KD + 
Sbjct: 53  EKTSQSMLMYVIRFCLPSNEHTLKKVLLIFWECVPKTDSNGKLLHEMILVCDAYRKDLQH 112

Query: 452 SNPLIRALAVRTMGCIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAKLYDISSSMVE 631
            N  +R   +R +  +R  ++ E L   +  CL+    YVR+ A   +  +Y     ++ 
Sbjct: 113 PNEFVRGSTLRFLCKLREPELLEPLMPAIRACLEHRHSYVRRNAVCAIFTIYKNFEFLIP 172

Query: 632 D 634
           D
Sbjct: 173 D 173


>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
 Frame = +2

Query: 323 VNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDSNPLIRALAVRTMGCIR 502
           VN + ++    K++ YL++    + Q D+  + V     D    NP+   LA++ +  + 
Sbjct: 79  VNLLSSNKYTEKQIGYLFISVLIEQQSDLMKLIVQGIRNDLTSRNPVHVNLALQCISNMG 138

Query: 503 VDKITEYLCEPLTKCL--KDEXPYVRKTAXVCVAKLY 607
             ++ E  C  L K L   +   +V+++A +C+ KL+
Sbjct: 139 SREMVEAFCTDLPKLLVSGETIDFVKQSAALCILKLF 175


>Z81519-6|CAB04220.2| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 428 TFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAK 601
           T+ + CE  N + R +   T+  +  ++  E +C+ + K L D+ P +R      V K
Sbjct: 65  TYEEKCEFLNGISRTILETTVESLTDNEFFEDICQLVLKFLPDDHPCIRAMCFHMVRK 122


>AL034543-6|CAJ43443.1| 1631|Caenorhabditis elegans Hypothetical
           protein F29C12.3 protein.
          Length = 1631

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 428 TFVKDCEDSNPLIRALAVRTMGCIRVDKITEYLCEPLTKCLKDEXPYVRKTAXVCVAK 601
           T+ + CE  N + R +   T+  +  ++  E +C+ + K L D+ P +R      V K
Sbjct: 65  TYEEKCEFLNGISRTILETTVESLTDNEFFEDICQLVLKFLPDDHPCIRAMCFHMVRK 122


>AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical
           protein ZK488.1 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +1

Query: 364 GVLILNEL--CKVTARHGYHGGQY 429
           G L++NEL  C+V   HG HG  +
Sbjct: 41  GTLVMNELRPCEVCGAHGAHGNHF 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,100,448
Number of Sequences: 27780
Number of extensions: 238984
Number of successful extensions: 570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)