Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B18
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.32 
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            31   0.56 
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)      31   0.56 
SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)                   29   4.0  
SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)                   29   4.0  
SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)                   27   9.1  
SB_34209| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_31930| Best HMM Match : RVT_1 (HMM E-Value=1.3e-33)                 27   9.1  
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 526 CGAWKANSCLVSTFFVYSFFHLFLTI 603
           CGAWK N C++  FF +    L L I
Sbjct: 73  CGAWKENKCMLICFFAFLLLLLILEI 98


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 526 CGAWKANSCLVSTFFVYSFFHLFLTIGLIV 615
           CGAWK N C++  FF+     L L I   V
Sbjct: 426 CGAWKENKCMLILFFILLLIVLGLEIAAAV 455


>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
          Length = 211

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 529 GAWKANSCLVSTFFVYSFFHLFLTIGLIV 615
           GAWK N C++ TFFV     L L I   V
Sbjct: 76  GAWKENRCMLGTFFVLLLILLTLEIAAAV 104


>SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)
          Length = 116

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   CALAHSIXYSIFEFKFNKITVYNSAKIIAVKTFFTVDFGHCVQ 132
           C    SI   IF  +F   T++N  K++  K+F  + F + ++
Sbjct: 16  CFPPKSIFAKIFLVEFAIWTIFNPQKVVLAKSFLEISFAYDIE 58


>SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)
          Length = 228

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   CALAHSIXYSIFEFKFNKITVYNSAKIIAVKTFFTVDFGHCVQ 132
           C    SI   IF  +F   T++N  K++  K+F  + F + ++
Sbjct: 16  CFPPKSIFAKIFLVEFAIWTIFNPQKVVLAKSFLEISFAYDIE 58



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   CALAHSIXYSIFEFKFNKITVYNSAKIIAVKTFFTVDFGHCVQ 132
           C    SI   IF  ++   T++N  K++  K+F  + F + ++
Sbjct: 128 CFPPKSIFAKIFLVEYAIWTIFNPQKVVLAKSFLEISFAYDIE 170


>SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)
          Length = 116

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   CALAHSIXYSIFEFKFNKITVYNSAKIIAVKTFFTVDFGHCVQ 132
           C    SI   IF  ++   T++N  K++  K+F  + F + ++
Sbjct: 16  CFPPKSIFAKIFLVEYAIWTIFNPQKVVLAKSFLEISFAYDIE 58


>SB_34209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +1

Query: 4   CALAHSIXYSIFEFKFNKITVYNSAKIIAVKTFFTVDFGHCVQ 132
           C    SI   IF  ++   T++N  K++  K+F  + F + ++
Sbjct: 16  CFPPKSIFAKIFLVEYAIWTIFNPQKVVLAKSFLEISFAYDIE 58


>SB_31930| Best HMM Match : RVT_1 (HMM E-Value=1.3e-33)
          Length = 405

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 227 HYYQDDKKVFVLFSTSRGKRCLRIRCYYNSC 319
           H+Y DD ++++ F         R +C   SC
Sbjct: 312 HFYADDTQLYLSFDPKHDSELKRAKCCIESC 342


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 526 CGAWKANSCLVSTFFVYSFFHLFLTI 603
           CGA K + CL++TFF   F  L + I
Sbjct: 345 CGAIKEHRCLLATFFALLFIILAVEI 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,986
Number of Sequences: 59808
Number of extensions: 286390
Number of successful extensions: 668
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)