Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B18
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 467 YTIIVYVTNMSRSEPKIFSRFWKSRNLVSCPVA 369
           +T I+Y +   R E ++ +    S N +  PVA
Sbjct: 42  HTYIIYESLCGRHEKRLLNELLSSYNTLERPVA 74


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 467 YTIIVYVTNMSRSEPKIFSRFWKSRNLVSCPVA 369
           +T I+Y +   R E ++ +    S N +  PVA
Sbjct: 42  HTYIIYESLCGRHEKRLLNELLSSYNTLERPVA 74


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 614 TISPIVRNRWKKLYTKNVLTKQELAFQ 534
           +++P  +N  K   T+  LTKQ  AF+
Sbjct: 442 SVTPYNKNYTKFCSTEKRLTKQNTAFE 468


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -3

Query: 262 QNKNFLVILIIMSSEIXSNSKYSVLTVQKLHKVF*NYKK 146
           QNKN L+   + S           +  QK+   F  YKK
Sbjct: 398 QNKNNLIPSALQSYSTSMRDPAFYMLYQKILSYFLRYKK 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,549
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)