Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B17
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    28   1.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.4  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.2  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   7.2  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.5  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   9.5  

>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 151 TVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 312
           T   +   PC+++ L  +     A+   +FT   +TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 601 RYIHSVFXTQSVSNVLSASFLTFTIQSVSSFTK 503
           R + S+     +SN+ + +FL   I   SSFTK
Sbjct: 4   RLLFSLICVFCISNIFTQAFLVHQIYGNSSFTK 36


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -1

Query: 327  IVESIKRNFSAILQPKEAGLE--LSCGELWCKVERNLRVFPFFEVAQSTVNTGVNSDLVH 154
            I+ ++K  F +I   K   L+  L    LW K   N  V     V  STVN  +  D++ 
Sbjct: 1684 IIPAVKGFFKSIALSK-GNLQDTLRLLNLWFKFGNNSNVINTLNVGISTVNIDIWLDVIP 1742

Query: 153  STRAGVH 133
               A +H
Sbjct: 1743 QLIARIH 1749


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 645 FFFYFIRNAFHIXYVGTY 592
           FFFYFI +  H   +G Y
Sbjct: 356 FFFYFILDHLHFISIGNY 373


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 303 FSAILQPKEAGLELSCGELWCKVERNLRVFPFFEVAQSTVNTGVN 169
           F  +LQ K AG  +S  +LW +      V P    A +T ++  N
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 185 LTQGSIRTSFTVHALASTSRHSLVVTTLNSARPQPRNAANNS 60
           L   ++ T+    A   TS HS+  T + S  P P  + N++
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNST 80


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 98  NSTSSPQGYVGKWTPA 145
           NS+S+PQGY   WTP+
Sbjct: 113 NSSSNPQGYA--WTPS 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,050
Number of Sequences: 5004
Number of extensions: 47959
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)