Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B17
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0019 + 403078-404211                                             29   2.4  
08_01_0647 + 5596338-5596423,5597442-5597550,5598450-5598579,559...    28   5.6  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    28   5.6  
04_03_0150 + 11877714-11878487,11880928-11881245                       28   7.4  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    28   7.4  

>09_01_0019 + 403078-404211
          Length = 377

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 334 RQHCREHQKEFQRHSSTQRGRS 269
           R+H R+ +K+  RH S+ RGRS
Sbjct: 207 RKHSRDEEKKTSRHRSSSRGRS 228


>08_01_0647 +
           5596338-5596423,5597442-5597550,5598450-5598579,
           5599241-5600016,5600342-5600497,5600627-5600722
          Length = 450

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 480 LQNKCEACLVKLLTDCIVNVKKLALSTL 563
           L N C A    LLTDC++ V++++ S+L
Sbjct: 275 LANACPALQNMLLTDCLLEVEEISSSSL 302


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 310  FDALYNADACTLTSCPTEAGKTQTLXFSL 396
            F  LYN D   L + PT +GKT    F++
Sbjct: 1370 FTVLYNTDDSVLVAAPTGSGKTICAEFAI 1398


>04_03_0150 + 11877714-11878487,11880928-11881245
          Length = 363

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 98  NSTSSPQGYVGKWTPARVL*TRSELTPVLTVDCATSKKGKTRRFLSTLHHNS 253
           N + SP+G      PAR    RS  TP    + A +     R   S+++HNS
Sbjct: 16  NKSQSPRGACASTEPARTQAKRSRPTPAGGNEQAVAVVVPRRSLPSSINHNS 67


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 310  FDALYNADACTLTSCPTEAGKTQTLXFSL 396
            F A YN+D   L + PT +GKT    F++
Sbjct: 1339 FTASYNSDDSVLVAAPTGSGKTICAEFAI 1367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,175,201
Number of Sequences: 37544
Number of extensions: 309851
Number of successful extensions: 743
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)