Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B17
         (651 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    56   8e-08
X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    56   1e-07
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    56   1e-07
BC069632-1|AAH69632.1|  549|Homo sapiens tigger transposable ele...    31   2.7  
BC069623-1|AAH69623.1|  549|Homo sapiens tigger transposable ele...    31   2.7  
AF251050-1|AAK34940.1|  511|Homo sapiens jerky protein.                31   2.7  

>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score = 56.4 bits (130), Expect = 8e-08
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
 Frame = +1

Query: 109 VTTRLCREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGL 288
           V  R C  VD     + EV + PC  ++ C L KG++  V+  FT    +   K  + G+
Sbjct: 22  VQFRDCGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNVQSKSSKAVVHGI 77

Query: 289 KNGAEIPFDALYNADACTL-TSCPTEAGKTQTLXFSLHIGKKLPTGNFEFKWKLWNEXNE 465
             G  +PF  +   D C    +CP +  KT +    L +  + P+     +W+L ++ N+
Sbjct: 78  LMGVPVPFP-IPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQ 136

Query: 466 SXMC 477
           S  C
Sbjct: 137 SLFC 140


>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
 Frame = +1

Query: 124 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAE 303
           C  VD     + EV + PC  ++ C L KG++  V+  FT    +   K  + G+  G  
Sbjct: 27  CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82

Query: 304 IPFDALYNADAC-TLTSCPTEAGKTQTLXFSLHIGKKLPTGNFEFKWKLWNEXNESXMC 477
           +PF  +   D C +  +CP +  KT +    L +  + P+     +W+L ++ N+S  C
Sbjct: 83  VPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFC 140


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 56.0 bits (129), Expect = 1e-07
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
 Frame = +1

Query: 124 CREVDASACTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAE 303
           C  VD     + EV + PC  ++ C L KG++  V+  FT    +   K  + G+  G  
Sbjct: 27  CGSVDG---VIKEVNVSPCP-TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVP 82

Query: 304 IPFDALYNADAC-TLTSCPTEAGKTQTLXFSLHIGKKLPTGNFEFKWKLWNEXNESXMC 477
           +PF  +   D C +  +CP +  KT +    L +  + P+     +W+L ++ N+S  C
Sbjct: 83  VPF-PIPEPDGCKSGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFC 140


>BC069632-1|AAH69632.1|  549|Homo sapiens tigger transposable
           element derived 7 protein.
          Length = 549

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 306 NFSAILQPKEAGLELSCGEL--WCKVERNLRVFPFFEVAQSTVNTGVNSDLVHSTRAGV 136
           N S ++QP   G+ LSC  L  W ++E +L +F   +  Q   + GV+   +++ ++ +
Sbjct: 322 NTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380


>BC069623-1|AAH69623.1|  549|Homo sapiens tigger transposable
           element derived 7 protein.
          Length = 549

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 306 NFSAILQPKEAGLELSCGEL--WCKVERNLRVFPFFEVAQSTVNTGVNSDLVHSTRAGV 136
           N S ++QP   G+ LSC  L  W ++E +L +F   +  Q   + GV+   +++ ++ +
Sbjct: 322 NTSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380


>AF251050-1|AAK34940.1|  511|Homo sapiens jerky protein.
          Length = 511

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 306 NFSAILQPKEAGLELSCGEL--WCKVERNLRVFPFFEVAQSTVNTGVNSDLVHSTRAGV 136
           N S ++QP   G+ LSC  L  W ++E +L +F   +  Q   + GV+   +++ ++ +
Sbjct: 322 NSSTLIQPMNQGVILSCKRLYRWKQLEESLVIFEESDDEQEKGDKGVSKIKIYNIKSAI 380


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,046,805
Number of Sequences: 237096
Number of extensions: 1746613
Number of successful extensions: 3121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3118
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)