Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B17
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologu...    55   5e-08
AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical ...    30   1.2  
M38249-1|AAA28060.1|  357|Caenorhabditis elegans G protein alpha...    28   5.0  
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.      28   6.6  

>AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologue
           protein 1 protein.
          Length = 154

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
 Frame = +1

Query: 97  EFNVVTTRLCREVDASACTVNEVRIDPCV-----NSRLCHLKKGKNAKVSFDFTPQFSTT 261
           EF  +  ++C+    S  TV++V+ D C        ++C  KKG    +   F P   T 
Sbjct: 16  EFIEIGYKVCK----SDGTVSQVKADGCELTVKDGKKVCLFKKGSRPIIQIAFKPSKDTD 71

Query: 262 KLKTGLFGLKNGAEIPFDALYNADACTL-TSCPTEAGKTQTLXFSLHIGKKLPTGN-FEF 435
           KLKT +     G+ +      N+DACT    CP  AG+ Q    S+ I +  P G   + 
Sbjct: 72  KLKTSVRAKVGGSAMVDFPQTNSDACTYGVKCPVSAGENQIFEQSISITENHPAGEVIQV 131

Query: 436 KWKLWNEXNESXMC 477
            W+L    +   +C
Sbjct: 132 NWQLTRPDSGKEVC 145


>AL023838-4|CAA19504.1|  218|Caenorhabditis elegans Hypothetical
           protein Y43C5A.4 protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 170 LTPVLTVDCATSKKGKTRRFLSTLH 244
           LTP++T  C+   KGK ++ LS+ H
Sbjct: 31  LTPIITAQCSKKPKGKKKKKLSSSH 55


>M38249-1|AAA28060.1|  357|Caenorhabditis elegans G protein alpha
           subunit protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
 Frame = +2

Query: 386 TLVCILEKNCLRETLNSNGSFGMXTMRAXCAATEQM*GLFSKAAHRLYSKR----*KTRT 553
           T VC   +  +RETLN    +G  +     A TE       K     Y KR         
Sbjct: 97  TRVCNAHEKLIRETLNDKAEYGPFSDAMFNALTELW---ADKGVQCAYDKREFFYLHDSA 153

Query: 554 KYIAHRLRXKHTV-YVPT 604
           KY   R+   HT  YVPT
Sbjct: 154 KYFLDRIARVHTPNYVPT 171


>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 148  CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 246
            CT ++  ++PC +   CHL+ G  +  S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335


>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
            C02B4.1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 148  CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 246
            CT ++  ++PC +   CHL+ G  +  S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335


>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
          Length = 1461

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 148  CTVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTP 246
            CT ++  ++PC +   CHL+ G  +  S D+TP
Sbjct: 1304 CTGSDFELNPCFDPARCHLRDGGWSTWS-DWTP 1335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,232,438
Number of Sequences: 27780
Number of extensions: 280192
Number of successful extensions: 649
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)