Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B15
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F657 Cluster: Ribonucleic acid binding protein S1; n=...   142   5e-33
UniRef50_UPI00015B5A05 Cluster: PREDICTED: similar to CG32705-PA...    46   0.001
UniRef50_Q7Q1Y8 Cluster: ENSANGP00000020915; n=1; Anopheles gamb...    41   0.023
UniRef50_Q15287 Cluster: RNA-binding protein with serine-rich do...    41   0.023
UniRef50_Q9VHC0 Cluster: CG16788-PA; n=2; Sophophora|Rep: CG1678...    40   0.039
UniRef50_UPI0000F1D93D Cluster: PREDICTED: similar to RNA bindin...    37   0.37 
UniRef50_Q6LFN8 Cluster: Putative uncharacterized protein; n=1; ...    36   0.85 

>UniRef50_Q2F657 Cluster: Ribonucleic acid binding protein S1; n=3;
           Coelomata|Rep: Ribonucleic acid binding protein S1 -
           Bombyx mori (Silk moth)
          Length = 293

 Score =  142 bits (345), Expect = 5e-33
 Identities = 78/169 (46%), Positives = 79/169 (46%)
 Frame = +3

Query: 99  MARNKSPLPAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 278
           MARNKSPLPAAE                                                
Sbjct: 1   MARNKSPLPAAEKEKKKPKESKKKKGDSGSSSSDSSGSSSSSSSRSSSRSSSSSSGSSSR 60

Query: 279 XXXXXXXXXXXXXXXXXXXXXXXTISPNKSPLKDRRDADREKIXDRSPTGEKKKSVLPLS 458
                                  TISPNKSPLKDRRDADREKI DRSPTGEKKKSVLPLS
Sbjct: 61  SSSSSSSSSSSSSNNGRSRPKKKTISPNKSPLKDRRDADREKIRDRSPTGEKKKSVLPLS 120

Query: 459 NDKAKIXEKQXXXXXXXXXXXXXXXXXTRIHIGRLTLNVTRDHIHEIFS 605
           NDKAKI EKQ                 TRIH+GRLTLNVTRDHIHEIFS
Sbjct: 121 NDKAKIKEKQERSPGRKKRERSPPPRPTRIHMGRLTLNVTRDHIHEIFS 169



 Score = 36.3 bits (80), Expect = 0.64
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 601 FPTYGTVKSIEFPMDRL 651
           F TYGTVKS+EFPMDRL
Sbjct: 168 FSTYGTVKSMEFPMDRL 184


>UniRef50_UPI00015B5A05 Cluster: PREDICTED: similar to CG32705-PA;
           n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
           CG32705-PA - Nasonia vitripennis
          Length = 742

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 31/78 (39%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 375 KDR-RDADREKIXDRSPTGEKKKSVLPLSNDKAKIXEKQXXXXXXXXXXXXXXXXXTRIH 551
           +DR RD DRE+  +R    EKKK        K K    +                 T+IH
Sbjct: 509 RDRDRDRDREREREREREREKKKPNAVPEKPKPK-PRSRTPSPRRKRRERSPIPRPTKIH 567

Query: 552 IGRLTLNVTRDHIHEIFS 605
           IG LT NVT+DHI EIFS
Sbjct: 568 IGHLTRNVTKDHITEIFS 585


>UniRef50_Q7Q1Y8 Cluster: ENSANGP00000020915; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000020915 - Anopheles gambiae
           str. PEST
          Length = 304

 Score = 41.1 bits (92), Expect = 0.023
 Identities = 22/33 (66%), Positives = 24/33 (72%)
 Frame = +3

Query: 543 RIHIGRLTLNVTRDHIHEIFSDIWYCEIN*VSY 641
           RIHIGRLT NV RDHI EIFS   Y EI+ V +
Sbjct: 165 RIHIGRLTRNVNRDHIVEIFSS--YGEISKVDF 195


>UniRef50_Q15287 Cluster: RNA-binding protein with serine-rich
           domain 1; n=47; Eumetazoa|Rep: RNA-binding protein with
           serine-rich domain 1 - Homo sapiens (Human)
          Length = 305

 Score = 41.1 bits (92), Expect = 0.023
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +3

Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
           T++HIGRLT NVT+DHI EIFS
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFS 182


>UniRef50_Q9VHC0 Cluster: CG16788-PA; n=2; Sophophora|Rep:
           CG16788-PA - Drosophila melanogaster (Fruit fly)
          Length = 374

 Score = 40.3 bits (90), Expect = 0.039
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 543 RIHIGRLTLNVTRDHIHEIFS 605
           RIH+GRLT NVT+DH+ EIFS
Sbjct: 220 RIHVGRLTRNVTKDHVFEIFS 240


>UniRef50_UPI0000F1D93D Cluster: PREDICTED: similar to RNA binding
           protein S1, serine-rich domain; n=1; Danio rerio|Rep:
           PREDICTED: similar to RNA binding protein S1,
           serine-rich domain - Danio rerio
          Length = 363

 Score = 37.1 bits (82), Expect = 0.37
 Identities = 14/22 (63%), Positives = 20/22 (90%)
 Frame = +3

Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
           T++++GRLT NVT+DHI EIF+
Sbjct: 260 TKLYLGRLTRNVTKDHIQEIFA 281


>UniRef50_Q6LFN8 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 646

 Score = 35.9 bits (79), Expect = 0.85
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +1

Query: 418 HQQEKKKNLCYLYQMTKLKLXKNRNDLQDVRSENAHHHHD 537
           HQ +KK  + Y++   ++K+ K RND  D  ++N H++H+
Sbjct: 447 HQIKKKNKISYIHSKKQIKIYKERNDNND-SNDNHHNNHN 485


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 439,495,060
Number of Sequences: 1657284
Number of extensions: 6371947
Number of successful extensions: 19137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19068
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)