Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B15
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit S14|...    26   5.5  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   7.2  

>SPAC23H3.07c |mrp2||mitochondrial ribosomal protein subunit
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 391 LIGRRLXIDHQQEKKKNLCYLYQMTKLKL 477
           L+ RRL  +H+ E++ NL Y+Y+  +L L
Sbjct: 15  LLCRRLFAEHEVERQSNL-YIYRNPELPL 42


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 546 IHIGRLTLNVTRDHIHEIF 602
           I +  LT NVT++HI EIF
Sbjct: 101 ILVENLTRNVTKEHIAEIF 119


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 436 KNLCYLYQMTKLKLXKNRNDLQDVRSENAHHHHDQLVSTLDD 561
           KNL + +  +K +  KN N+L++V+ E      + L STL +
Sbjct: 469 KNLDFSHTASKAETYKNSNELENVKREQP--FSELLPSTLQE 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,796
Number of Sequences: 5004
Number of extensions: 28299
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)