Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B15
(653 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 41 0.003
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 41 0.003
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 41 0.003
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 41 0.003
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 41 0.003
AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2 ... 41 0.003
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 41 0.003
L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein. 32 1.6
D16688-1|BAA04090.1| 342|Homo sapiens LTG9/MLLT3 protein protein. 32 1.6
BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or mix... 32 1.6
AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or mix... 32 1.6
AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or mix... 32 1.6
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
T++HIGRLT NVT+DHI EIFS
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFS 182
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
T++HIGRLT NVT+DHI EIFS
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFS 182
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
T++HIGRLT NVT+DHI EIFS
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFS 182
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
T++HIGRLT NVT+DHI EIFS
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFS 182
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
T++HIGRLT NVT+DHI EIFS
Sbjct: 138 TKVHIGRLTRNVTKDHIMEIFS 159
>AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2
protein.
Length = 228
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
T++HIGRLT NVT+DHI EIFS
Sbjct: 84 TKVHIGRLTRNVTKDHIMEIFS 105
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 41.1 bits (92), Expect = 0.003
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 540 TRIHIGRLTLNVTRDHIHEIFS 605
T++HIGRLT NVT+DHI EIFS
Sbjct: 161 TKVHIGRLTRNVTKDHIMEIFS 182
>L13744-1|AAA58361.1| 568|Homo sapiens AF-9 protein.
Length = 568
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 348 TISPNKSPLKDRRDADREKIXDRSPTGEKKKSVLPLSND 464
T S +K +KD+ K+ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>D16688-1|BAA04090.1| 342|Homo sapiens LTG9/MLLT3 protein protein.
Length = 342
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 348 TISPNKSPLKDRRDADREKIXDRSPTGEKKKSVLPLSND 464
T S +K +KD+ K+ S T EKKKS LP +D
Sbjct: 93 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 131
>BC036089-1|AAH36089.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 348 TISPNKSPLKDRRDADREKIXDRSPTGEKKKSVLPLSND 464
T S +K +KD+ K+ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>AL512635-1|CAH70705.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 348 TISPNKSPLKDRRDADREKIXDRSPTGEKKKSVLPLSND 464
T S +K +KD+ K+ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
>AL354879-1|CAI14771.1| 568|Homo sapiens myeloid/lymphoid or
mixed-lineage leukemia (trithorax homolog, Drosophila);
tra protein.
Length = 568
Score = 32.3 bits (70), Expect = 1.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 348 TISPNKSPLKDRRDADREKIXDRSPTGEKKKSVLPLSND 464
T S +K +KD+ K+ S T EKKKS LP +D
Sbjct: 319 TCSADKKQIKDKSHVKMGKVKIESETSEKKKSTLPPFDD 357
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,561,963
Number of Sequences: 237096
Number of extensions: 957412
Number of successful extensions: 2278
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2278
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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