Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B15
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118927-1|AAM50787.1|  374|Drosophila melanogaster LD23870p pro...    40   0.002
AJ459409-1|CAD30680.1|  374|Drosophila melanogaster RNA-binding ...    40   0.002
AE014297-964|AAF54396.2|  374|Drosophila melanogaster CG16788-PA...    40   0.002
BT029153-1|ABJ17088.1|  708|Drosophila melanogaster SD01194p pro...    28   9.6  
BT028873-1|ABI34254.1|  708|Drosophila melanogaster SD20656p pro...    28   9.6  

>AY118927-1|AAM50787.1|  374|Drosophila melanogaster LD23870p
           protein.
          Length = 374

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 543 RIHIGRLTLNVTRDHIHEIFS 605
           RIH+GRLT NVT+DH+ EIFS
Sbjct: 220 RIHVGRLTRNVTKDHVFEIFS 240


>AJ459409-1|CAD30680.1|  374|Drosophila melanogaster RNA-binding
           protein S1 protein.
          Length = 374

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 543 RIHIGRLTLNVTRDHIHEIFS 605
           RIH+GRLT NVT+DH+ EIFS
Sbjct: 220 RIHVGRLTRNVTKDHVFEIFS 240


>AE014297-964|AAF54396.2|  374|Drosophila melanogaster CG16788-PA
           protein.
          Length = 374

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +3

Query: 543 RIHIGRLTLNVTRDHIHEIFS 605
           RIH+GRLT NVT+DH+ EIFS
Sbjct: 220 RIHVGRLTRNVTKDHVFEIFS 240


>BT029153-1|ABJ17088.1|  708|Drosophila melanogaster SD01194p
           protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 543 RIHIGRLTLNVTRDHIHEIF 602
           R+HI  LT  VT++HI EIF
Sbjct: 536 RLHIKGLTRQVTKEHITEIF 555


>BT028873-1|ABI34254.1|  708|Drosophila melanogaster SD20656p
           protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 543 RIHIGRLTLNVTRDHIHEIF 602
           R+HI  LT  VT++HI EIF
Sbjct: 536 RLHIKGLTRQVTKEHITEIF 555


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,905
Number of Sequences: 53049
Number of extensions: 310946
Number of successful extensions: 1083
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)