Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B15
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical ... 31 0.94
Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical pr... 28 5.0
U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine rece... 28 5.0
AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein. 28 5.0
AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical ... 28 5.0
U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnorm... 28 6.7
U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnorm... 28 6.7
AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor ... 28 6.7
Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF003389-8|AAC71131.1| 214|Caenorhabditis elegans Hypothetical ... 27 8.8
>AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical
protein M01G5.1 protein.
Length = 889
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 385 VMLIGRRLXIDHQQEKKKNLCY--LYQMTKLKLXKNRNDLQDVRSENAHHHHDQLVSTLD 558
V+ R I HQQ+K+ N Y L + + NR +L+D+R+ + + S L+
Sbjct: 201 VLCSEHRSTIPHQQQKRMNAMYSNLMYFGEFQHTSNRRELKDIRAATETEYDTLVASALE 260
>Z92822-7|CAH10786.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 487 RNDLQDVRSENAHHHHDQLVSTL 555
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-9|CAH10804.1| 601|Caenorhabditis elegans Hypothetical
protein W06F12.1d protein.
Length = 601
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 487 RNDLQDVRSENAHHHHDQLVSTL 555
+N +Q + + AHHHH QLV +
Sbjct: 126 QNLVQQQQQQQAHHHHQQLVGEM 148
>Z83244-1|CAB05827.2| 634|Caenorhabditis elegans Hypothetical
protein W06F12.1a protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 487 RNDLQDVRSENAHHHHDQLVSTL 555
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>U64841-1|AAB04845.2| 357|Caenorhabditis elegans Serpentine
receptor, class t protein13 protein.
Length = 357
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Frame = -3
Query: 297 SWMMKMNVMNFLSYWMMTERMTLKNYLMN-----FHYYHCCWSLSHLSFSCFLWVSSSLS 133
SW NV N S++ T+ N L++ + Y C + +S +W+ S
Sbjct: 181 SWFFDPNVGNDPSFYHNIPH-TINNLLVSASSTPLYIYLCYHLIFKFGYSTSMWLYRSKQ 239
Query: 132 QLQAKAIYF*PFSTYYVFIYV 70
Q+ +A+ F +IYV
Sbjct: 240 QIVIQAVILCSFHAVAAYIYV 260
>AF145376-1|AAD39815.1| 634|Caenorhabditis elegans LIT-1 protein.
Length = 634
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 487 RNDLQDVRSENAHHHHDQLVSTL 555
+N +Q + + AHHHH QLV +
Sbjct: 159 QNLVQQQQQQQAHHHHQQLVGEM 181
>AF022969-2|AAB69893.2| 354|Caenorhabditis elegans Hypothetical
protein C29G2.4 protein.
Length = 354
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = -3
Query: 291 MMKMNVMNFLSYWMMTERMTLKNYLMNFHYYHCCWSLSH-LSFSCFLWVSSSLSQLQAKA 115
M+ N +L+Y + TL L Y+H C+ L +S +W+ S Q+ A+
Sbjct: 189 MIGNNPKIYLNYTTVVNN-TLSTVLTTGMYFHLCYYLIFKFGYSTSMWLYKSKRQIIAQG 247
Query: 114 IY--F*PFSTYYVFIYV 70
I F ST ++ YV
Sbjct: 248 IILTFFHASTSIIYEYV 264
>U49956-4|AAK77620.1| 1117|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform a protein.
Length = 1117
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 373 LKIVVMLIGRRLXIDHQQEKKKNLCYLYQMTKLKLXKNRNDLQDVRSENAHHHHD-QLVS 549
+ +++++I L + Q+K KN + + L K + D + + HHHH L +
Sbjct: 564 IALILIVIAVALCMIVVQKKSKNRKQMSDLDVLDTYKQDSMTPDYHTTSRHHHHQGNLPA 623
Query: 550 TLDD 561
TL +
Sbjct: 624 TLHE 627
>U49956-3|AAK77621.1| 1122|Caenorhabditis elegans Variable abnormal
morphology protein1, isoform b protein.
Length = 1122
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 373 LKIVVMLIGRRLXIDHQQEKKKNLCYLYQMTKLKLXKNRNDLQDVRSENAHHHHD-QLVS 549
+ +++++I L + Q+K KN + + L K + D + + HHHH L +
Sbjct: 564 IALILIVIAVALCMIVVQKKSKNRKQMSDLDVLDTYKQDSMTPDYHTTSRHHHHQGNLPA 623
Query: 550 TLDD 561
TL +
Sbjct: 624 TLHE 627
>AF040269-1|AAC38970.1| 1122|Caenorhabditis elegans Eph receptor
tyrosine kinase protein.
Length = 1122
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 373 LKIVVMLIGRRLXIDHQQEKKKNLCYLYQMTKLKLXKNRNDLQDVRSENAHHHHD-QLVS 549
+ +++++I L + Q+K KN + + L K + D + + HHHH L +
Sbjct: 564 IALILIVIAVALCMIVVQKKSKNRKQMSDLDVLDTYKQDSMTPDYHTTSRHHHHQGNLPA 623
Query: 550 TLDD 561
TL +
Sbjct: 624 TLHE 627
>Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical
protein F54B11.6 protein.
Length = 183
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 201 YHCCWSLSHLSFSC 160
YHCCW+ ++ S C
Sbjct: 134 YHCCWNTAYCSVEC 147
>AF003389-8|AAC71131.1| 214|Caenorhabditis elegans Hypothetical
protein F23H11.1 protein.
Length = 214
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 201 YHCCWSLSHLSFSC 160
YHCCW+ ++ S C
Sbjct: 160 YHCCWNTAYCSVEC 173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,279,270
Number of Sequences: 27780
Number of extensions: 156811
Number of successful extensions: 582
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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