Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B14
         (430 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1JUZ2 Cluster: Rieske-domain protein Neverland; n=1; B...   130   2e-29
UniRef50_Q0CSY0 Cluster: Putative uncharacterized protein; n=5; ...    33   1.9  
UniRef50_Q0UE32 Cluster: Predicted protein; n=1; Phaeosphaeria n...    33   3.3  
UniRef50_A0BDH4 Cluster: Chromosome undetermined scaffold_100, w...    32   4.4  
UniRef50_Q8IBH6 Cluster: Putative uncharacterized protein PF07_0...    32   5.8  
UniRef50_UPI00006CCA28 Cluster: hypothetical protein TTHERM_0027...    31   7.7  

>UniRef50_Q1JUZ2 Cluster: Rieske-domain protein Neverland; n=1;
           Bombyx mori|Rep: Rieske-domain protein Neverland -
           Bombyx mori (Silk moth)
          Length = 453

 Score =  130 bits (313), Expect = 2e-29
 Identities = 66/80 (82%), Positives = 70/80 (87%)
 Frame = +2

Query: 116 MADRQHFPSAITEAVSSNTACPDTGPKAETTNIFLLLQKNITIESSKHVFSSIVEYILIL 295
           MADRQHFPSAITEAVSSNTACPDTGPKAETTNIFLLLQ+NITIESSKHVFSSIVEYILIL
Sbjct: 1   MADRQHFPSAITEAVSSNTACPDTGPKAETTNIFLLLQRNITIESSKHVFSSIVEYILIL 60

Query: 296 TLIVCVLRDFVCYIQVIYQS 355
           TL+      F   + VIY+S
Sbjct: 61  TLMFA----FSAILYVIYKS 76



 Score = 87.8 bits (208), Expect = 8e-17
 Identities = 39/42 (92%), Positives = 41/42 (97%)
 Frame = +3

Query: 303 LFAFSAILYVIYKSYISPVFYKKELTEVGFDHIPQGPNKGXR 428
           +FAFSAILYVIYKSYISPVFYKKELTEVGFDHIPQGP+KG R
Sbjct: 63  MFAFSAILYVIYKSYISPVFYKKELTEVGFDHIPQGPDKGRR 104


>UniRef50_Q0CSY0 Cluster: Putative uncharacterized protein; n=5;
           Trichocomaceae|Rep: Putative uncharacterized protein -
           Aspergillus terreus (strain NIH 2624)
          Length = 397

 Score = 33.5 bits (73), Expect = 1.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 125 RQHFPSAITEAVSSNTACPDTGPKAETTNIFLLLQKNITIESSKHVFSSI 274
           R HF  + T+ + S T CPD GP+  T    ++ +K  + ES    FS++
Sbjct: 11  RSHFSQSKTQKLLSGTMCPDQGPQIATVGDKIISKK--SWESLSSTFSNL 58


>UniRef50_Q0UE32 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 695

 Score = 32.7 bits (71), Expect = 3.3
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +2

Query: 152 EAVSSNTACPDTGPKAETTNIFLLLQKNITIESSKHVFSSIVEYILILTLIV 307
           EA S+N       P+ + T+  LLL+ N++ E S HV+  ++ Y L   LI+
Sbjct: 151 EASSTNPVFRRYAPRHDGTSWHLLLKFNVSQERSSHVYPLVLPYALHKLLIM 202


>UniRef50_A0BDH4 Cluster: Chromosome undetermined scaffold_100,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_100,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 406

 Score = 32.3 bits (70), Expect = 4.4
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 212 IFLLLQKNITIESSKHVFSSIVEYILILTLIVCVLRDFVCYIQVIYQ 352
           I  L Q  +  E +  +  S++ ++++L+L +C+ R F  + Q IY+
Sbjct: 154 IVTLNQNKLKYEKNIQLILSMIPFVILLSLAICIHRSFPIFRQDIYE 200


>UniRef50_Q8IBH6 Cluster: Putative uncharacterized protein PF07_0118;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            PF07_0118 - Plasmodium falciparum (isolate 3D7)
          Length = 5561

 Score = 31.9 bits (69), Expect = 5.8
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 82   NEIVVSNSNKQNGGSSTFSIRHHGSRLFEHGV--PRHRTESRNNKHFSATPKEYND 243
            + + ++N+N  N  +S  SIR  G  L ++ +    H   + NN H +     YN+
Sbjct: 1947 SNVNINNNNNNNNNNSNGSIRSSGYNLIDNNINYSNHNNNNHNNNHNNNNYYYYNN 2002


>UniRef50_UPI00006CCA28 Cluster: hypothetical protein
           TTHERM_00279840; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00279840 - Tetrahymena
           thermophila SB210
          Length = 355

 Score = 31.5 bits (68), Expect = 7.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 94  VSNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKHFSATPKEYND 243
           VSN   QN  +++   + H       G  +++   R  K FS TP+ YN+
Sbjct: 273 VSNIKSQNKNNNSKDNQPHQIESIHKGFDKYQNFKRKQKDFSLTPEVYNE 322


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,864,834
Number of Sequences: 1657284
Number of extensions: 7507775
Number of successful extensions: 22154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22137
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 20653970351
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)