Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B14
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 29 0.31
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 28 0.71
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 27 1.2
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 27 1.2
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 26 2.9
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 2.9
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 25 3.8
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 5.0
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 5.0
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 6.6
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1... 25 6.6
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 29.1 bits (62), Expect = 0.31
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 137 PSAITEAVSSNTAC--PDTGPKAETTNIFLLLQKNITIESSKHVFSSIVEYILILTLIVC 310
PS+ N C P+T K++T +I L + +N + + +++ + ++L + +
Sbjct: 150 PSSSLLKTPDNDFCARPETFVKSDTADIKLQIHQNNLVLTFLDT-TTVSKVNIVLEIHIP 208
Query: 311 VLRDFVCYIQVI 346
VLRDFV + Q I
Sbjct: 209 VLRDFVTFEQYI 220
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 27.9 bits (59), Expect = 0.71
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 104 QTNKM-ADRQHFPSAITEAVSSNTACPDTGPKAETTN 211
+TN++ +HFP+ E ++ P TGP E+T+
Sbjct: 377 ETNQIPTTEEHFPATTEEVAPASEEKPATGPAEESTS 413
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -2
Query: 249 DSIVIFFWSSRKMFVV--SAFGPVSGHAVFE 163
D+I + F S+R + V S FG ++GHAVFE
Sbjct: 244 DAIPLKFLSARCLKFVRPSLFGYITGHAVFE 274
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 1.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 97 SNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNN 207
SN +Q GG ST+ I HG R G + + + NN
Sbjct: 170 SNELEQFGGESTYFITKHGVRTLAMGFLFNFSSNANN 206
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 2.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 92 LSQIQTNKMADRQHFPSAITEAVSSNTA 175
LS + T K +D +H + T VSSNTA
Sbjct: 168 LSNVFTEKSSDYRHGLGSPTSLVSSNTA 195
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 270 ELNTCFDDSIVIFFWSSRKMFVVSAFGP 187
EL+ CF+D+I F+ V F P
Sbjct: 1018 ELHRCFEDTISFFYNKKNPKVVTGVFNP 1045
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 105 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQ 209
K+ + +I + PPS+KP T P PD + K++
Sbjct: 346 KEVERKIEKLLEPPSQKP---TVALPVPDDRPKRR 377
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 93 CLKFKQTKWRIVNIFHPPS 149
C Q +W I IFHPP+
Sbjct: 357 CFLSVQLRWFITYIFHPPA 375
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 82 NEIVVSNSNKQNGGSSTFSIRHHGSRLFEHGV 177
+ ++++ +K N S SIR ++ FEHG+
Sbjct: 176 SNVIMAADSKHNYSSGRPSIRLQSTQYFEHGL 207
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 158 VSSNTACPDTGPKAETTNIFLLLQKNITIESSKHVFSSIVEYILILTLIVCVLRDF 325
+ +++ DT KAE + + + + K + + I+E I+ LTL C DF
Sbjct: 392 IETSSPSQDTSSKAEDSPTVQKIADDFSSAVGKDLRTDIIEQIIPLTL--CCKHDF 445
>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 303 LFAFSAIL-YVIYKSYISPVFYKKELTEV 386
L AFS+++ Y +Y++Y P KEL V
Sbjct: 369 LVAFSSVMTYDVYRNYFRPNASGKELVRV 397
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,273
Number of Sequences: 5004
Number of extensions: 34154
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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