Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B14
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0051 - 12831167-12832188,12832245-12832512 29 1.2
10_08_1058 + 22608852-22609172,22609257-22610651 28 2.8
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160... 28 2.8
08_02_0168 - 13640894-13641973 28 3.7
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 28 3.7
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 27 4.9
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711... 27 4.9
07_03_0652 + 20295171-20295812 27 6.4
09_01_0091 + 1298829-1298898,1299461-1299535,1299642-1299799,130... 27 8.5
01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046 27 8.5
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833 27 8.5
>07_03_0051 - 12831167-12832188,12832245-12832512
Length = 429
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 146 ITEAVSSNTACPDTGPKAETTNIFLLLQKNITIESSKHVFSSIVE 280
+ + NT C D K + T + + N+ I S K+++S+I+E
Sbjct: 43 VVDGFMRNTNCDDPELKEKLTRLCTVPDPNLIICSYKYIYSTIIE 87
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 230 FGVAEKCLLFLLSVRCRGTPCSKRRLP 150
FG+A CLL + TPC + RLP
Sbjct: 222 FGIATLCLLIASAAFLAATPCYRVRLP 248
>08_01_0193 +
1599970-1600503,1601488-1601919,1602010-1602147,
1602532-1602600
Length = 390
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +2
Query: 239 TIESSKHVFSSIVEYILILTLIV--CVLRDFVCYIQVIY 349
T S +F+SI+ ++ + T+I+ C+L + VC +QVI+
Sbjct: 211 TWRSCAVLFASIMSWMYLTTIILTSCMLFNLVCNLQVIH 249
>08_02_0168 - 13640894-13641973
Length = 359
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 76 ELNEIVVSNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKH 213
E+ ++ + K +GG T R+HG + G P H+ S H
Sbjct: 217 EMQQVYTFDMQKSSGGDQT---RNHGDKNSNSGGPVHKKSSSQRHH 259
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 139 WKMLTIRHFV--CLNLRQQFRSIRINYCFFFCVLY 41
W+M T H + L L + + CFF+C L+
Sbjct: 526 WEMETSNHDIMPALQLSYDYLPFHLQQCFFYCALF 560
>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +1
Query: 163 FEHGVPRHRTESRNNKHF----SATPKEYND*VIKTRIQFDR 276
F H +P SRN++HF S + Y+ +T QFDR
Sbjct: 1701 FSHSIPNDGYPSRNSRHFDRQNSGNERRYDRQNERTDRQFDR 1742
>07_03_1050 -
23570785-23570824,23570938-23571004,23571114-23571196,
23572028-23572201,23572268-23572471,23572570-23573300
Length = 432
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 348 YMTCI*HTKS-RRTQTIKVSIKIYSTIELNTCF-DDSIVIFFWSSRKMFVVSAFGPVSG 178
YM C+ S T S +IY T +++ F DD + +F V FGPVSG
Sbjct: 261 YMDCLGLAHSCNLMDTGTGSNQIYMTFPVHSKFTDDDVENYFKYCLNFIVTRQFGPVSG 319
>07_03_0652 + 20295171-20295812
Length = 213
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 88 IVVSNSNKQ--NGGSSTFSIRHHGSRLFEHGVPRHRTESRNNK 210
+VV+N + G S S+ +HG R+ VPR E+R+ +
Sbjct: 71 VVVTNPSNSAYRYGESLASVTYHGERVGASVVPRGEVEARSTR 113
>09_01_0091 +
1298829-1298898,1299461-1299535,1299642-1299799,
1300629-1300979
Length = 217
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 162 LRTRRAPTPDRKQKQQ 209
LRTRR PTPD QQ
Sbjct: 192 LRTRRVPTPDNHADQQ 207
>01_05_0570 + 23347957-23348940,23349038-23349181,23349666-23350046
Length = 502
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 239 LYSFGVAEKCLLFLLSVRCRGTPCSKR 159
+YS A KC F + VRC GT S R
Sbjct: 463 IYSTHRASKCAEFFIFVRCGGTSWSFR 489
>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
Length = 503
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 129 NIFHPPSRKPSLRTRRAPTPDR 194
N HPPS+ P R AP P R
Sbjct: 45 NAAHPPSQAPGPAARHAPGPAR 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,383,096
Number of Sequences: 37544
Number of extensions: 190858
Number of successful extensions: 565
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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