Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B14
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF101305-1|AAF98592.2| 179|Caenorhabditis elegans Hypothetical ... 28 2.5
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 28 3.3
AL033514-1|CAA22081.2| 275|Caenorhabditis elegans Hypothetical ... 27 4.3
AF172092-1|AAD48876.1| 275|Caenorhabditis elegans homeodomain p... 27 4.3
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 27 4.3
AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical... 27 7.5
AL034393-25|CAI59120.1| 797|Caenorhabditis elegans Hypothetical... 27 7.5
AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical... 27 7.5
AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical... 27 7.5
AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical... 27 7.5
Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z50796-3|CAA90667.1| 184|Caenorhabditis elegans Hypothetical pr... 26 10.0
AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type tra... 26 10.0
AF179358-1|AAF13868.1| 184|Caenorhabditis elegans cyclin-depend... 26 10.0
AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical ... 26 10.0
AF100659-3|AAC68969.2| 334|Caenorhabditis elegans Serpentine re... 26 10.0
AC084159-8|AAK39361.2| 655|Caenorhabditis elegans Hypothetical ... 26 10.0
>AF101305-1|AAF98592.2| 179|Caenorhabditis elegans Hypothetical
protein C04F5.2 protein.
Length = 179
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 200 ETTNIFLLLQKNITIESSKHVFSSIVEYILILTLIVCVLRDFVCYIQVIY 349
E++ FLLL + I H F ++ ++L I+C + + VC ++
Sbjct: 51 ESSLFFLLLTVHFKIRRGSHPFFGLLFGCVLLCYIICGVAEAVCQFLFLF 100
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 27.9 bits (59), Expect = 3.3
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +2
Query: 122 DRQHFPSAITEAVSSNTACPDTGPKAETTNIFLLLQKNI 238
+R HF I A S N AC G K T NI LL +KNI
Sbjct: 370 ERNHFFDTIGFACSENCAC---GGKC-TNNITLLPEKNI 404
>AL033514-1|CAA22081.2| 275|Caenorhabditis elegans Hypothetical
protein Y75B8A.1 protein.
Length = 275
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 105 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 212
KQ +W + H R+ + + D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261
>AF172092-1|AAD48876.1| 275|Caenorhabditis elegans homeodomain
protein PHP-3 protein.
Length = 275
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 105 KQTKWRIVNIFHPPSRKPSLRTRRAPTPDRKQKQQT 212
KQ +W + H R+ + + D+KQKQ+T
Sbjct: 226 KQKRWELAKYLHLTERQVKIWFQNRRMKDKKQKQRT 261
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 147 SRKPSLRTRRAPTPDRKQK 203
SR P RTRR+P+P R+++
Sbjct: 104 SRSPPRRTRRSPSPPRRRR 122
>AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical
protein Y18D10A.7c protein.
Length = 936
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 315 SAILYVIYKSYISPVFYKKELTEVGFDHI 401
S + ++IY +Y++ FY + ++GFD +
Sbjct: 547 SILSFLIYLAYLAAAFYGVKHLKIGFDFV 575
>AL034393-25|CAI59120.1| 797|Caenorhabditis elegans Hypothetical
protein Y18D10A.7b protein.
Length = 797
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 315 SAILYVIYKSYISPVFYKKELTEVGFDHI 401
S + ++IY +Y++ FY + ++GFD +
Sbjct: 531 SILSFLIYLAYLAAAFYGVKHLKIGFDFV 559
>AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical
protein Y18D10A.7a protein.
Length = 833
Score = 26.6 bits (56), Expect = 7.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 315 SAILYVIYKSYISPVFYKKELTEVGFDHI 401
S + ++IY +Y++ FY + ++GFD +
Sbjct: 547 SILSFLIYLAYLAAAFYGVKHLKIGFDFV 575
>AC024791-20|AAO12400.1| 574|Caenorhabditis elegans Hypothetical
protein Y47G6A.5b protein.
Length = 574
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 145 HHGSRLFEHGVPRHRTESRNNKHFSATPKE 234
HHGS H P + N+ + TPKE
Sbjct: 83 HHGSAKCSHSEPEEKMLIVENRFLAQTPKE 112
>AC024791-19|AAF60657.2| 618|Caenorhabditis elegans Hypothetical
protein Y47G6A.5a protein.
Length = 618
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 145 HHGSRLFEHGVPRHRTESRNNKHFSATPKE 234
HHGS H P + N+ + TPKE
Sbjct: 127 HHGSAKCSHSEPEEKMLIVENRFLAQTPKE 156
>Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical
protein T24D3.1 protein.
Length = 174
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 135 FHPPSRKPSLRTRRAPTPDRKQKQQTFFC 221
F PS PS T+ + TP +++F C
Sbjct: 86 FSTPSTSPSTSTQSSTTPSNSDNKKSFQC 114
>Z50796-3|CAA90667.1| 184|Caenorhabditis elegans Hypothetical
protein T05A6.1 protein.
Length = 184
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 132 IFHPPSRKPSLRTRRAPTP 188
IF P SR+P++RTR + +P
Sbjct: 165 IFTPKSRRPTIRTRSSCSP 183
>AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 135 FHPPSRKPSLRTRRAPTPDRKQKQQTFFC 221
F PS PS T+ + TP +++F C
Sbjct: 86 FSTPSTSPSTSTQSSTTPSNSDNKKSFQC 114
>AF179358-1|AAF13868.1| 184|Caenorhabditis elegans cyclin-dependent
kinase inhibitor protein.
Length = 184
Score = 26.2 bits (55), Expect = 10.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 132 IFHPPSRKPSLRTRRAPTP 188
IF P SR+P++RTR + +P
Sbjct: 165 IFTPKSRRPTIRTRSSCSP 183
>AF101312-2|AAC69222.2| 475|Caenorhabditis elegans Hypothetical
protein F56E10.3 protein.
Length = 475
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 294 SIKIYSTIELNTCFDDSIVIFFWSSRKM 211
S+K ++ CF IFFW RKM
Sbjct: 128 SLKTFTEAYTTCCFYFQSAIFFWIGRKM 155
>AF100659-3|AAC68969.2| 334|Caenorhabditis elegans Serpentine
receptor, class z protein23 protein.
Length = 334
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 257 HVFS-SIVEYILILTLIVCVLRDFVCY 334
H+F + V YILI+ LI+C+++ V +
Sbjct: 59 HIFKMNKVAYILIVCLIICIIKTCVYF 85
>AC084159-8|AAK39361.2| 655|Caenorhabditis elegans Hypothetical
protein Y73B3A.3 protein.
Length = 655
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 302 IVCVLRDFVCYIQVIYQSCFL*KGTDRSRLRSYTSR 409
I+ V + + ++Y CFL TD SRL Y ++
Sbjct: 460 IIGVCTQYTAFYDILYLLCFLVFFTDFSRLSRYENQ 495
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,617,596
Number of Sequences: 27780
Number of extensions: 191287
Number of successful extensions: 600
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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