Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B14
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    29   0.022
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.63 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   4.4  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 29.1 bits (62), Expect = 0.022
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 233 NITIESSKHVFSSIVEYILILTLIVCVLRDFVCYIQVIY 349
           N+T+ S+K  + S   YI +LTL+   +  ++CY+   Y
Sbjct: 628 NVTL-STKCPYPSYYSYIGVLTLVATSMPTYICYLGKAY 665


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.63
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 141 PPSRKPSLRTRRAPTP 188
           PPSRK S R RR  TP
Sbjct: 400 PPSRKESGRRRRRRTP 415


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 245 QSLYSFGVAEKCLLFLLSVRC 183
           Q L S+ V+  CLLFL+   C
Sbjct: 443 QLLDSYAVSGFCLLFLMFFEC 463


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 245 QSLYSFGVAEKCLLFLLSVRC 183
           Q L S+ V+  CLLFL+   C
Sbjct: 496 QLLDSYAVSGFCLLFLMFFEC 516


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +1

Query: 97  SNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKHFSAT 225
           S  N   G S   S  HHGS+ +         E+  N   S T
Sbjct: 389 SGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLT 431


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 351 SPVFYKKELTEVGFDHIPQGPNKGXR 428
           +PV YKK    +G D++ +  N   R
Sbjct: 507 TPVVYKKTPHAMGLDYVGEDDNMQVR 532


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 178 PRHRTESRNNKHFSATPKEYN 240
           P H T    + H  ATP  ++
Sbjct: 414 PHHHTMGHGHSHIHATPHHHH 434


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +2

Query: 278 EYILILTLIVCVLRDFVCYIQVIYQS 355
           E ILI    +C+L+   C +Q  + +
Sbjct: 149 EAILIKNERICILKSITCALQFCHNA 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,223
Number of Sequences: 438
Number of extensions: 2461
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)