Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B11
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   4.0  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    26   4.0  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    26   4.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   5.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   6.9  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 205 KRKVSTLLSKECLALQGKNSAMEGDAWVLSFLXAENRLLQGG 330
           +RK+      EC  L G+N  M+ + WV   + ++N  L  G
Sbjct: 810 RRKLKNSYEYECSFLVGENIGMKSERWV-PMMSSDNAWLPRG 850


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = +1

Query: 199 KLKRKVSTLLSKECLALQGKNSAMEGDAWVLSFLXAENRLLQGGCRRKCLXILKTIRDRH 378
           ++   +S+ L K+ + LQ +        W+  F      LL G        +LK++R  H
Sbjct: 155 EILESLSSWLEKDAIDLQSQ--------WIFCFCYKLPELLNGEDISTLRSVLKSLRSTH 206

Query: 379 LDLPGNPVTCYHMKTLLLY 435
              P   ++   ++ +L+Y
Sbjct: 207 TSFPALQMSASALQAVLVY 225


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/79 (21%), Positives = 34/79 (43%)
 Frame = +1

Query: 199 KLKRKVSTLLSKECLALQGKNSAMEGDAWVLSFLXAENRLLQGGCRRKCLXILKTIRDRH 378
           ++   +S+ L K+ + LQ +        W+  F      LL G        +LK++R  H
Sbjct: 155 EILESLSSWLEKDAIDLQSQ--------WIFCFCYKLPELLNGEDISTLRSVLKSLRSTH 206

Query: 379 LDLPGNPVTCYHMKTLLLY 435
              P   ++   ++ +L+Y
Sbjct: 207 TSFPALQMSASALQAVLVY 225


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -1

Query: 391 PASPSGGLLLFSVXSDISADIRLA-ADGSPPXGNSAPKRLPPSRSFSLATRDIPLI--IK 221
           P+SP+     FS   D++  +  A +    P  + +  +LP  RS SL    +PLI  +K
Sbjct: 399 PSSPTFSTRSFSPTPDVTPLVTPAHSPRLRPMDDPSCVQLPSIRSLSLRPSQVPLIPPLK 458

Query: 220 SKPSVLTSA 194
             P+  +++
Sbjct: 459 CDPNAFSAS 467


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 376  HLDLPGNPVTCYHMK 420
            H DL  NP +CYH++
Sbjct: 1258 HYDLLHNPASCYHIR 1272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,528
Number of Sequences: 5004
Number of extensions: 38878
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)