Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_B11
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142     29   3.1  
03_04_0001 - 16208401-16208778                                         29   4.1  
07_03_1549 - 27633229-27633340,27633418-27633509,27633601-276342...    28   5.4  
07_01_0976 + 8226194-8226473,8227116-8227291,8227366-8227486,822...    28   5.4  
03_05_1092 - 30331323-30331463,30331562-30331648,30331825-303320...    28   5.4  
12_02_0313 + 17404002-17406410                                         27   9.4  

>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
          Length = 407

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 352 ILKTIRDRHLDLPGNPVTCYHMKTLLLYECXKHPREHEWDEAAIGDRIN 498
           +L T+  +++ +PG+P+   H K L   +  +   E  +D   + D++N
Sbjct: 323 VLDTLSTQNI-IPGSPIAVNHSKVLNAVQEARRAAERAYDVPRVDDKVN 370


>03_04_0001 - 16208401-16208778
          Length = 125

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -1

Query: 325 LAADGSPPXGNSAPKRLPPSRSFSLATRDIPLIIKSKPSVLTSAIIVG 182
           +AA   P  G+  P   PPS   SLA         + P V+TSA   G
Sbjct: 56  VAATAFPTSGSGGPLPPPPSSQASLAVDPTAAASPTDPPVVTSAAPAG 103


>07_03_1549 -
           27633229-27633340,27633418-27633509,27633601-27634270,
           27634731-27634870,27634958-27635299
          Length = 451

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 297 PXGGEPSAARRMSAEMSXHTENNKRPP 377
           P GG+P+AARR++ E+         PP
Sbjct: 4   PEGGDPAAARRVAVELELELPLGGAPP 30


>07_01_0976 +
           8226194-8226473,8227116-8227291,8227366-8227486,
           8228684-8228757,8229269-8229332,8229969-8230039,
           8230279-8230368,8230491-8230661,8231668-8231739
          Length = 372

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 331 IRLAADGSPPXGNSAPKRLPPSRSFSLATRDIPL 230
           +RL A   PP  N A   LPP   F+ A  D PL
Sbjct: 29  LRLPASSFPPWSNCAKSGLPPRGPFATAA-DTPL 61


>03_05_1092 -
           30331323-30331463,30331562-30331648,30331825-30332085,
           30332231-30332636,30333702-30334240
          Length = 477

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 570 VHVRQEVVGAAAALERGYQLQEDPVDPVADGG-LVPLVLPRVFXALVQQQRLHVITRHRV 394
           V V     GAAAA  RG + +   ++P  DGG LV LV+P         +R      HRV
Sbjct: 35  VRVAMRSGGAAAAAARGVRCRASLIEP--DGGRLVELVVPEEGGRREAARREAAALAHRV 92


>12_02_0313 + 17404002-17406410
          Length = 802

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = -2

Query: 576 KRVHVRQEVVGAAAALERGYQLQEDPVDPVAD 481
           +++   +E +   AAL+R ++L+E+P+D  +D
Sbjct: 115 RKIRKVRERLNEIAALKRDFELKEEPIDTPSD 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,716,759
Number of Sequences: 37544
Number of extensions: 327449
Number of successful extensions: 1063
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)