Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_B10
(634 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria gla... 62 1e-08
UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila melanogast... 48 1e-04
UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster subgro... 48 2e-04
UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Re... 46 6e-04
UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like p... 46 8e-04
UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.... 42 0.009
UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles g... 42 0.012
UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like p... 40 0.050
UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1; ... 38 0.26
UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles g... 37 0.46
UniRef50_Q6J4U7 Cluster: Pol protein; n=9; cellular organisms|Re... 37 0.46
UniRef50_Q9Y027 Cluster: Reverse transcriptase; n=3; Trypanosoma... 36 0.61
UniRef50_Q5EFG6 Cluster: Reverse transcriptase; n=2; Bothriurus ... 36 0.61
UniRef50_Q868R8 Cluster: Reverse transcriptase; n=1; Anopheles g... 35 1.4
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 35 1.4
UniRef50_Q89W15 Cluster: Bll0878 protein; n=1; Bradyrhizobium ja... 35 1.9
UniRef50_UPI00015B47A9 Cluster: PREDICTED: similar to pol-like p... 34 2.5
UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted p... 34 2.5
UniRef50_A7EHZ7 Cluster: Putative uncharacterized protein; n=4; ... 34 3.3
UniRef50_UPI0000E47DE5 Cluster: PREDICTED: similar to endonuclea... 33 4.3
UniRef50_UPI0000E4766B Cluster: PREDICTED: similar to ORF2-encod... 33 4.3
UniRef50_UPI00015B4820 Cluster: PREDICTED: similar to pol-like p... 33 5.7
UniRef50_UPI00015B4772 Cluster: PREDICTED: similar to pol-like p... 33 7.5
UniRef50_Q9Q919 Cluster: Gp052L; n=2; Leporipoxvirus|Rep: Gp052L... 32 10.0
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-... 32 10.0
>UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria
glabrata|Rep: Pol-like protein - Biomphalaria glabrata
(Bloodfluke planorb)
Length = 1222
Score = 62.1 bits (144), Expect = 1e-08
Identities = 29/76 (38%), Positives = 39/76 (51%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAS 307
N H+ M+G TDT G L +I +LC+LN SPT + +DL++C P L
Sbjct: 133 NAHNTMWGSNNTDTRGRMLEDIFLQHDLCILNDASPTYLHPGTGSFTCIDLTVCVPGLLD 192
Query: 306 XHSWYTSSSTFGSDHF 259
W S+ GSDHF
Sbjct: 193 DFKWSVSNDLRGSDHF 208
Score = 37.1 bits (82), Expect = 0.35
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRLEWF 55
+D A+YRPIAL+S + K E ++ +RL W+
Sbjct: 498 SDPANYRPIALTSCICKTMERMINSRLVWY 527
>UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila
melanogaster|Rep: Pol protein - Drosophila melanogaster
(Fruit fly)
Length = 1227
Score = 48.4 bits (110), Expect = 1e-04
Identities = 30/112 (26%), Positives = 47/112 (41%)
Frame = -2
Query: 594 IXIVSIYXARSSFXXXXXXXXXXXXXXXXXXXXXXFNCHHQMFGCGTTDTNGVHLVEILD 415
I IV+ Y S N ++G T+T G + ++
Sbjct: 101 INIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVIL 160
Query: 414 LQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLASXHSWYTSSSTFGSDHF 259
+L +LN GSPT + N + +D+S+ +P +A SW S + GSDHF
Sbjct: 161 ENSLIVLNDGSPTHLSTHNTF-THIDISLISPQIAHMCSWSISDNLHGSDHF 211
Score = 36.3 bits (80), Expect = 0.61
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRLEWF 55
+D+ SYRPI+L S L K E ++ RL WF
Sbjct: 508 SDINSYRPISLLSCLGKTLEKIIAQRLTWF 537
>UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster
subgroup|Rep: Putative ORF2 - Drosophila melanogaster
(Fruit fly)
Length = 1219
Score = 48.0 bits (109), Expect = 2e-04
Identities = 27/76 (35%), Positives = 38/76 (50%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAS 307
N H +G TT+ G +D +L LLN SPT + N + +DL++C+P LA
Sbjct: 133 NGWHHPWGSPTTNKRGKITHRFIDNMHLILLNDKSPTHFSTHNTY-THIDLTLCSPILAP 191
Query: 306 XHSWYTSSSTFGSDHF 259
W + GSDHF
Sbjct: 192 HAKWKILNDLHGSDHF 207
>UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Rep:
Pol-like protein - Aedes aegypti (Yellowfever mosquito)
Length = 1208
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLAS 307
N HH +G + + G ++++ + +L +LN G+ T ++ SA+D+S+C+P + +
Sbjct: 140 NGHHPEWGSVSPNDRGSLIMDVAEKLDLVILNDGATTFTR--GQRNSAIDVSLCSPSIVN 197
Query: 306 XHSWYTSSSTFGSDH 262
W GSDH
Sbjct: 198 RLLWTAKEDPMGSDH 212
>UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 963
Score = 46.0 bits (104), Expect = 8e-04
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT---KPNEKPSAVDLSICTPD 316
N HH M+ G D G H+ + NL +LN P R T KP KP + D+S + +
Sbjct: 142 NAHHSMWSVGKEDHIGKHIASEITHTNLVILN--DPFRATLIPKPQNKPGSPDISAISLN 199
Query: 315 LASXHSWYTSSSTFGSDH 262
L W G DH
Sbjct: 200 LIHKTEWSLLGDALGGDH 217
Score = 36.7 bits (81), Expect = 0.46
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = -2
Query: 129 YRPIALSSVLTKVAEHLVKNRLEWF 55
YRPIAL+S L K+ E ++K RL+W+
Sbjct: 497 YRPIALASSLLKLLEKIIKKRLDWY 521
>UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein R11E3.3 - Caenorhabditis elegans
Length = 931
Score = 42.3 bits (95), Expect = 0.009
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGC-GTTDTNGVHLVEILDLQ-NLCLLNTGSPTRRTKPNEKPSAVDLSICTPDL 313
N HH + G+ DT G L E++DL +L + N TR S+ D++ICT DL
Sbjct: 41 NAHHSAWHSEGSEDTRGRELAELIDLHPDLIIQNEQVHTRAD--TYSISSPDITICTADL 98
Query: 312 ASXHSWYTSSSTFGSDH 262
A+ W T GSDH
Sbjct: 99 ATKCHWSTLYK-LGSDH 114
>UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 973
Score = 41.9 bits (94), Expect = 0.012
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = -2
Query: 468 FGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNEKPSAVDLSICTPDLASXHSWYT 289
+G +T+ G ++E NL L+N G + N + S +DL+ C+P LAS +W
Sbjct: 128 WGSKSTNARGNAVLEHFSRLNLVLVNVGFCPTFVR-NSRTSIIDLTFCSPALASSMNWRV 186
Query: 288 SSSTFGSDH 262
S++ SDH
Sbjct: 187 SNAYTLSDH 195
>UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 1119
Score = 39.9 bits (89), Expect = 0.050
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRTKPNE--KPSAVDLSICTPDL 313
N HH ++G NG +VE LD N LLN SPT N S +DL+ +P L
Sbjct: 129 NAHHSVWGSSKECCNGKVIVENLDQGNFILLNNQSPTHVKISNSGCSYSNIDLTFVSPGL 188
Query: 312 A 310
A
Sbjct: 189 A 189
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = -2
Query: 126 RPIALSSVLTKVAEHLVKNRLEWF 55
RPI+L+S + KV E LVK RLEW+
Sbjct: 477 RPISLASCMLKVMERLVKERLEWW 500
>UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1;
Aedes aegypti|Rep: Lian-Aa1 retrotransposon protein -
Aedes aegypti (Yellowfever mosquito)
Length = 1189
Score = 37.5 bits (83), Expect = 0.26
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGS-PTRRTKPNEKPSAVDLSICTPDLA 310
N HH ++G + G L+E L +L LLN G+ PT E+ +D+++C+ ++
Sbjct: 124 NAHHIIWGSSDINLRGSSLMEYLSSTDLGLLNIGNRPTFMVSNREE--VLDITLCSNRIS 181
Query: 309 -SXHSWYTSSSTFGSDH 262
+W+ S SDH
Sbjct: 182 HELTNWHVSDEESLSDH 198
>UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1173
Score = 36.7 bits (81), Expect = 0.46
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPSAVDLSICTPDLA 310
N H+ +G T G L+ ++ L +LN G+ + T + S +D++ +P +
Sbjct: 123 NAWHEAWGSARTKRKGEELLNTVEQLGLIVLNRGNTSTFTGRGIAGESVIDVTFASPSIV 182
Query: 309 SXHSWYTSSSTFGSDH 262
++W S + SDH
Sbjct: 183 RYNTWEVLKSYWYSDH 198
>UniRef50_Q6J4U7 Cluster: Pol protein; n=9; cellular organisms|Rep:
Pol protein - Drosophila melanogaster (Fruit fly)
Length = 1092
Score = 36.7 bits (81), Expect = 0.46
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLC-LLNTGSPTRRTKPNEK-PSAVDLSICTPDL 313
N H+ +GC G L + + ++ ++ TGS T K PSA+D SIC L
Sbjct: 167 NAKHRQWGCIRACQRGAALYDAIQADSMAEIVATGSATHFPHDTRKSPSAIDFSIC-KRL 225
Query: 312 ASXHSWYTSSSTFGSDH 262
+SS+ SDH
Sbjct: 226 GRYEKRISSSAHLSSDH 242
>UniRef50_Q9Y027 Cluster: Reverse transcriptase; n=3; Trypanosoma
cruzi|Rep: Reverse transcriptase - Trypanosoma cruzi
Length = 608
Score = 36.3 bits (80), Expect = 0.61
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = -2
Query: 132 SYRPIALSSVLTKVAEHLVKNRLEW 58
SYRPI+L+S+++KVAE +V RL W
Sbjct: 134 SYRPISLTSIVSKVAEKMVLKRLLW 158
>UniRef50_Q5EFG6 Cluster: Reverse transcriptase; n=2; Bothriurus
flavidus|Rep: Reverse transcriptase - Bothriurus
flavidus
Length = 193
Score = 36.3 bits (80), Expect = 0.61
Identities = 18/29 (62%), Positives = 19/29 (65%)
Frame = -2
Query: 150 RINDVASYRPIALSSVLTKVAEHLVKNRL 64
R DV SYRPIAL+SV K E LV RL
Sbjct: 58 RRTDVTSYRPIALTSVFAKTLERLVLQRL 86
>UniRef50_Q868R8 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 988
Score = 35.1 bits (77), Expect = 1.4
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 405 LCLLNTGSPTRRTKPNEKPSAVDLSICTPDLASXHSWYTSSSTFGSDH 262
L LLN G+ + N + S VD+S C+P L ++W T SDH
Sbjct: 159 LVLLNQGNQSTWIGANGRNSIVDVSFCSPSLVGDNNWRVCDET-PSDH 205
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 35.1 bits (77), Expect = 1.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 486 NCHHQMFGCGTTDTNGVHLVEILDLQNLCLLNTGSPTRRT-KPNEKPSAVDLSICTPDLA 310
N H ++G G L E L + +L TGSPTR P+ PS +D ++ +
Sbjct: 140 NARHWLWGDTCNSPRGRELAEALSVTGAKILATGSPTRYPYVPSHTPSCIDFAV-YHGIP 198
Query: 309 SXHSWYTSSSTFGSDH 262
+ T S SDH
Sbjct: 199 DHLATITQSWDLDSDH 214
>UniRef50_Q89W15 Cluster: Bll0878 protein; n=1; Bradyrhizobium
japonicum|Rep: Bll0878 protein - Bradyrhizobium
japonicum
Length = 109
Score = 34.7 bits (76), Expect = 1.9
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +2
Query: 353 FSLGFVRLVGEPVLSKHKFCKSNISTKCTPLVSVVPQPNI 472
F L F R+VGEP L+ H+ + I+ T L ++V +PN+
Sbjct: 7 FELWFCRIVGEPRLAGHEMLQPTIAHTPTGLAAMVLRPNV 46
>UniRef50_UPI00015B47A9 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 819
Score = 34.3 bits (75), Expect = 2.5
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -2
Query: 126 RPIALSSVLTKVAEHLVKNRLEWF 55
RPI+L+S + KV E ++K RLEW+
Sbjct: 100 RPISLASCMLKVMERIIKERLEWW 123
>UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to secreted protein - Nasonia vitripennis
Length = 1163
Score = 34.3 bits (75), Expect = 2.5
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = -2
Query: 129 YRPIALSSVLTKVAEHLVKNRLEWFS 52
+RPIAL++ L K+ E ++ +R++WF+
Sbjct: 602 FRPIALANCLLKILERVINDRMQWFT 627
>UniRef50_A7EHZ7 Cluster: Putative uncharacterized protein; n=4;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 898
Score = 33.9 bits (74), Expect = 3.3
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -2
Query: 147 INDVASYRPIALSSVLTKVAEHLVKNRLEWFS 52
++ + SYRPIAL SVL K E L+ ++ W S
Sbjct: 403 LSSLRSYRPIALLSVLGKGLERLIARQMSWTS 434
>UniRef50_UPI0000E47DE5 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=3;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 862
Score = 33.5 bits (73), Expect = 4.3
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRL 64
ND A+YRP++L+S++ K E LV+ R+
Sbjct: 413 NDPANYRPVSLTSIICKSMEKLVRKRV 439
>UniRef50_UPI0000E4766B Cluster: PREDICTED: similar to ORF2-encoded
protein; n=5; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to ORF2-encoded protein -
Strongylocentrotus purpuratus
Length = 869
Score = 33.5 bits (73), Expect = 4.3
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -2
Query: 141 DVASYRPIALSSVLTKVAEHLVKNRLEWF 55
D ASYRP+A S L+KV E +V RL+ F
Sbjct: 424 DFASYRPVANLSFLSKVIERIVSARLQSF 452
>UniRef50_UPI00015B4820 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 1050
Score = 33.1 bits (72), Expect = 5.7
Identities = 13/30 (43%), Positives = 23/30 (76%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRLEWF 55
+D + RPI+L+S L K+ E ++KN+L+W+
Sbjct: 553 SDGKNVRPISLTSCLCKLFETMLKNKLQWW 582
>UniRef50_UPI00015B4772 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 751
Score = 32.7 bits (71), Expect = 7.5
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -2
Query: 141 DVASYRPIALSSVLTKVAEHLVKNRLEWF 55
D + RPI+L+ L+K+ E +VKNRLE++
Sbjct: 176 DGSGLRPISLTPCLSKLFERMVKNRLEYW 204
>UniRef50_Q9Q919 Cluster: Gp052L; n=2; Leporipoxvirus|Rep: Gp052L -
Rabbit fibroma virus
Length = 350
Score = 32.3 bits (70), Expect = 10.0
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 14 NRIDYW-L*NYCFQLNHSKRFFTRCSATLVKTEDSAIGLYEATSLIRQGS*MQTNQHYL 187
N ++W L N F+ H K FFT C T++ T + L + L+ +++ + YL
Sbjct: 88 NSNEFWRLYNSLFRFTHCKSFFTACMYTIIATLSMLVTLVLSNKLLYAVDMIESIESYL 146
>UniRef50_Q6UV17 Cluster: Endonuclease and reverse
transcriptase-like protein; n=25; Arthropoda|Rep:
Endonuclease and reverse transcriptase-like protein -
Bombyx mori (Silk moth)
Length = 986
Score = 32.3 bits (70), Expect = 10.0
Identities = 13/27 (48%), Positives = 22/27 (81%)
Frame = -2
Query: 144 NDVASYRPIALSSVLTKVAEHLVKNRL 64
+D +SYRPIA++S+L+KV E ++ +L
Sbjct: 531 SDPSSYRPIAITSLLSKVMERIINIQL 557
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 517,397,242
Number of Sequences: 1657284
Number of extensions: 8567278
Number of successful extensions: 17429
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17425
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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